RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ZNF217O75362 1048 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 RPS2P15880 293 aaKnown RBP12.9□□□□□ -0.34
LIMS1-215ENST00000544547 GUK1Q16774 197 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 TMEM104Q8NE00 496 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 NINJ1Q92982 152 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 PIPOXQ9P0Z9 390 aa12.9□□□□□ -0.34
LIMS1-215ENST00000544547 A0A087X0M5 115 aa12.9□□□□□ -0.35
LIMS1-215ENST00000544547 A0A1B0GX30 115 aa12.9□□□□□ -0.35
LIMS1-215ENST00000544547 PRAMEF27A3QJZ7 478 aa12.9□□□□□ -0.35
LIMS1-215ENST00000544547 DIRAS3O95661 229 aa12.9□□□□□ -0.35
LIMS1-215ENST00000544547 SLC2A1P11166 492 aa12.9□□□□□ -0.35
LIMS1-215ENST00000544547 SSTP61278 116 aa12.9□□□□□ -0.35
LIMS1-215ENST00000544547 RPS15P62841 145 aaKnown RBP12.9□□□□□ -0.35
LIMS1-215ENST00000544547 ZP2Q05996 745 aa12.9□□□□□ -0.35
LIMS1-215ENST00000544547 ATPAF1Q5TC12 328 aaPredicted RBP12.9□□□□□ -0.35
LIMS1-215ENST00000544547 ANKRD16Q6P6B7 361 aa12.9□□□□□ -0.35
LIMS1-215ENST00000544547 SEC11CQ9BY50 192 aa12.9□□□□□ -0.35
LIMS1-215ENST00000544547 B4GALT7Q9UBV7 327 aa12.9□□□□□ -0.35
LIMS1-215ENST00000544547 WNT11O96014 354 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 MBP02144 154 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 HOXB9P17482 250 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-215ENST00000544547 SLC35D3Q5M8T2 416 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 TMEM215Q68D42 235 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 ADAMTS18Q8TE60 1221 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 SGK3Q96BR1 496 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 TMEM59Q9BXS4 323 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 NPDC1Q9NQX5 325 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-215ENST00000544547 SAGE1Q9NXZ1 904 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 DHCR7Q9UBM7 475 aaKnown RBP12.89□□□□□ -0.35
LIMS1-215ENST00000544547 TMED7Q9Y3B3 224 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 ZNF724A8MTY0 619 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 H3BML4 177 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 NXPH3O95157 252 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 PNMTP11086 282 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 EPHA1P21709 976 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 CHRDL2Q6WN34 429 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 ACAD8Q9UKU7 415 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 WASF3Q9UPY6 502 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 BHLHE40O14503 412 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 JTBO76095 146 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 ABOP16442 354 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 DRD1P21728 446 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 CD96P40200 585 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 C15orf54Q8N8G6 183 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 OR9A4Q8NGU2 314 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 SOSTQ9BQB4 213 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 LMAN1LQ9HAT1 526 aa12.89□□□□□ -0.35
LIMS1-215ENST00000544547 GALR3O60755 368 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-215ENST00000544547 LILRB3O75022 631 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 ZNF43P17038 809 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 OTX2P32243 289 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 RAB32Q13637 225 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 KIR2DS3Q14952 304 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 CYB5R2Q6BCY4 276 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 CCDC74AQ96AQ1 378 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 BMFQ96LC9 184 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 C1orf123Q9NWV4 160 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 TRAV8-7A0A075B6U6 113 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 THBS1P07996 1170 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 MUC1P15941 1255 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-215ENST00000544547 BLVRBP30043 206 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-215ENST00000544547 SFTPDP35247 375 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 ASCL1P50553 236 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 RAB11AP62491 216 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 MRPS34P82930 218 aaKnown RBP12.88□□□□□ -0.35
LIMS1-215ENST00000544547 MRPL49Q13405 166 aaKnown RBP12.88□□□□□ -0.35
LIMS1-215ENST00000544547 EEF1A1P5Q5VTE0 462 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 KIRREL2Q6UWL6 708 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 SHISA6Q6ZSJ9 500 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 OR51M1Q9H341 326 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 C9orf170A2RU37 121 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 MPTX1A8MV57 137 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 TMEM229AB2RXF0 380 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 P04436 131 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 RPL23AP62750 156 aaKnown RBP12.88□□□□□ -0.35
LIMS1-215ENST00000544547 LHX8Q68G74 356 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 PLPP5Q8NEB5 264 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 SLC25A28Q96A46 364 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 RAB22AQ9UL26 194 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 ZNF318Q5VUA4 2279 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 A0A1B0GV90 55 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 ZFP92A6NM28 416 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 SLC17A2O00624 439 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 MBTPS2O43462 519 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 GATCO43716 136 aaKnown RBP12.88□□□□□ -0.35
LIMS1-215ENST00000544547 RNF224P0DH78 156 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 RAB5AP20339 215 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 THBS2P35442 1172 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 ZNF93P35789 620 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-215ENST00000544547 EMDP50402 254 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 LPAL2Q16609 132 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 ZNF100Q8IYN0 542 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 TMEM123Q8N131 208 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 GPR137CQ8N3F9 429 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 SLC25A38Q96DW6 304 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 CMTM3Q96MX0 182 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 NAA11Q9BSU3 229 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-215ENST00000544547 MBNL1Q9NR56 388 aaKnown RBP12.88□□□□□ -0.35
LIMS1-215ENST00000544547 VDAC3Q9Y277 283 aa12.88□□□□□ -0.35
LIMS1-215ENST00000544547 C17orf105B2RV13 164 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms