RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 CENPEQ02224 2701 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 A0A075B6Q4 140 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 IGKV3D-15A0A087WSY6 115 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 TRBV4-1A0A0J9YWV2 114 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 NKX2-6A6NCS4 301 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 EFCAB9A8MZ26 197 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 LRRN3E7EW58 273 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 C11orf98E9PRG8 122 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 BLOC1S5-TXNDC5H3BN57 136 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 PLPP3O14495 311 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 AKR7A2O43488 359 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 RNF13O43567 381 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 OR10H3O60404 316 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 RAMP1O60894 148 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 FKBP6O75344 327 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 MRPL33O75394 65 aaKnown RBP4.48□□□□□ -1.69
CLIP1-217ENST00000543205 TNFSF13O75888 250 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 CCNB2O95067 398 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 ADORA3P0DMS8 318 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 AGTR1P30556 359 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 P2RY4P51582 365 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 SLURP1P55000 103 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 PUDPQ08623 228 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 SLC17A1Q14916 467 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 KPNB1Q14974 876 aaKnown RBP4.48□□□□□ -1.69
CLIP1-217ENST00000543205 GUSBP1Q15486 140 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 EXOC3L2Q2M3D2 409 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 ACSM6Q6P461 480 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 VWA1Q6PCB0 445 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 NANOGNBQ7Z5D8 188 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 LUZP2Q86TE4 346 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 UEVLDQ8IX04 471 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 ZNF100Q8IYN0 542 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 ZDHHC23Q8IYP9 409 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 LINC00471Q8N535 108 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 LRRC17Q8N6Y2 441 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 ADPRHL1Q8NDY3 354 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 DNAAF1Q8NEP3 725 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 OR9K2Q8NGE7 335 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 SLC7A13Q8TCU3 470 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 STARD4Q96DR4 205 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 OXGR1Q96P68 337 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 KRTAP9-3Q9BYQ3 159 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 UCK2Q9BZX2 261 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 OPN3Q9H1Y3 402 aaPredicted RBP4.48□□□□□ -1.69
CLIP1-217ENST00000543205 PARPBPQ9NWS1 579 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 SEC14L4Q9UDX3 406 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 SAMHD1Q9Y3Z3 626 aaKnown RBP4.48□□□□□ -1.69
CLIP1-217ENST00000543205 AP4S1Q9Y587 144 aa4.48□□□□□ -1.69
CLIP1-217ENST00000543205 SPENQ96T58 3664 aaKnown RBP4.48□□□□□ -1.69
CLIP1-217ENST00000543205 C13orf42A0A1B0GVH6 325 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 SH3PXD2BA1X283 911 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 ZAR1LA6NP61 321 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 MS4A18H0YCH9 400 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 OGG1O15527 345 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 SSX5O60225 188 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 FZD7O75084 574 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 SERPINI2O75830 405 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 CGAP01215 116 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 ASAH2BP0C7U1 165 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 RNF224P0DH78 156 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 MAKP20794 623 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 GPR4P46093 362 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 CDKN1BP46527 198 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 SLC9A3P48764 834 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 ASCL1P50553 236 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 CNN1P51911 297 aaKnown RBP4.47□□□□□ -1.69
CLIP1-217ENST00000543205 ARHGDIAP52565 204 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 HMGA2P52926 109 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 TOP3AQ13472 1001 aaPredicted RBP4.47□□□□□ -1.69
CLIP1-217ENST00000543205 GK3PQ14409 553 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 CDSNQ15517 529 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 MS4A18Q3C1V0 323 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 CASP12Q6UXS9 341 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 TMPRSS11FQ6ZWK6 438 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 CREB3L2Q70SY1 520 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 AAED1Q7RTV5 226 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 NUFIP2Q7Z417 695 aaKnown RBP4.47□□□□□ -1.69
CLIP1-217ENST00000543205 OAFQ86UD1 273 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 MEX3DQ86XN8 651 aaKnown RBP4.47□□□□□ -1.69
CLIP1-217ENST00000543205 UBE2J2Q8N2K1 259 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 MINDY2Q8NBR6 621 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 RELL2Q8NC24 303 aaPredicted RBP4.47□□□□□ -1.69
CLIP1-217ENST00000543205 PAPD5Q8NDF8 572 aaKnown RBP4.47□□□□□ -1.69
CLIP1-217ENST00000543205 OR4K5Q8NGD3 323 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 TMEM45BQ96B21 275 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 SLCO4A1Q96BD0 722 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 APH1AQ96BI3 265 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 MUS81Q96NY9 551 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 RBM24Q9BX46 236 aaKnown RBP4.47□□□□□ -1.69
CLIP1-217ENST00000543205 NDEL1Q9GZM8 345 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 SIRPDQ9H106 197 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 TAS2R5Q9NYW4 299 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 STEAP1Q9UHE8 339 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 ING1Q9UK53 422 aaPredicted RBP4.47□□□□□ -1.69
CLIP1-217ENST00000543205 NOX1Q9Y5S8 564 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 KLF2Q9Y5W3 355 aaPredicted RBP4.47□□□□□ -1.69
CLIP1-217ENST00000543205 FLVCR1Q9Y5Y0 555 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 MYO7BQ6PIF6 2116 aa4.47□□□□□ -1.69
CLIP1-217ENST00000543205 ITPR2Q14571 2701 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms