RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 UPP1Q16831 310 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 ZXDCQ2QGD7 858 aaPredicted RBP8.51□□□□□ -1.05
CLIP1-214ENST00000540539 VWA1Q6PCB0 445 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 DPY19L2P2Q6ZN68 376 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 ZNF836Q6ZNA1 936 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 ADIPOR2Q86V24 386 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 PIANPQ8IYJ0 282 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 FAM71E2Q8N5Q1 922 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 COMMD1Q8N668 190 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 ZNF615Q8N8J6 731 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 STT3BQ8TCJ2 826 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 RAB40AQ8WXH6 277 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 TECTBQ96PL2 329 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 SLC22A12Q96S37 553 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 NDC1Q9BTX1 674 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 TBL1XR1Q9BZK7 514 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 ADGRL4Q9HBW9 690 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 PDE7BQ9NP56 450 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 TAS2R8Q9NYW2 309 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 HCSTQ9UBK5 93 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 UPB1Q9UBR1 384 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 OSGIN2Q9Y236 505 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 YBX2Q9Y2T7 364 aaKnown RBP8.51□□□□□ -1.05
CLIP1-214ENST00000540539 COL4A6Q14031 1691 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 A0A087WV62 115 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 H3BQ15 152 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 COCHO43405 550 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 IGFBP6P24592 240 aaPredicted RBP8.51□□□□□ -1.05
CLIP1-214ENST00000540539 ARR3P36575 388 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 LILRA4P59901 499 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 SNRPNP63162 240 aaKnown RBP8.51□□□□□ -1.05
CLIP1-214ENST00000540539 PMS2P11Q13670 270 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 MRPL58Q14197 206 aaKnown RBP8.51□□□□□ -1.05
CLIP1-214ENST00000540539 ARL6IP1Q15041 203 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 COA6Q5JTJ3 125 aaKnown RBP8.51□□□□□ -1.05
CLIP1-214ENST00000540539 STPG4Q8N801 248 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 TMEM104Q8NE00 496 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 OR10H4Q8NGA5 316 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 OR4C5Q8NGB2 326 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 OR5AK3PQ8NH89 298 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 ADAMTS18Q8TE60 1221 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 DNASE2BQ8WZ79 361 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 C4orf36Q96KX1 117 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 C20orf144Q9BQM9 153 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 GINS3Q9BRX5 216 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 BOCQ9BWV1 1114 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 SLC25A18Q9H1K4 315 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 MTIF3Q9H2K0 278 aaKnown RBP8.51□□□□□ -1.05
CLIP1-214ENST00000540539 DPEP2Q9H4A9 486 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 HINT3Q9NQE9 182 aaKnown RBP8.51□□□□□ -1.05
CLIP1-214ENST00000540539 GULP1Q9UBP9 304 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 ZNF281Q9Y2X9 895 aa8.51□□□□□ -1.05
CLIP1-214ENST00000540539 A0A1W2PR48 441 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 YJEFN3A6XGL0 299 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 J3QLW9 94 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 ERAL1O75616 437 aaKnown RBP8.5□□□□□ -1.05
CLIP1-214ENST00000540539 B3GAT3O94766 335 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 ZNF19P17023 458 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 MDKP21741 143 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-214ENST00000540539 PRPS1P60891 318 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 HSF1Q00613 529 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 ID2Q02363 134 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 EBPQ15125 230 aaKnown RBP8.5□□□□□ -1.05
CLIP1-214ENST00000540539 TRIM61Q5EBN2 209 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 Q6ZVU0 165 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 ZNF101Q8IZC7 436 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 MORN4Q8NDC4 146 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 BHLHE23Q8NDY6 225 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 OR4X1Q8NH49 305 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 ZNF689Q96CS4 500 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-214ENST00000540539 SMIM12Q96EX1 92 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 SLC5A7Q9GZV3 580 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 NRIP3Q9NQ35 241 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 FKBP11Q9NYL4 201 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 FOXD3Q9UJU5 478 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-214ENST00000540539 HEATR5AQ86XA9 2040 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 PLXNA3P51805 1871 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 KCNE1BA0A087WTH5 132 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 ZNF320A2RRD8 509 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 H7BY64 318 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 CYR61O00622 381 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 GJB5O95377 273 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 CEACAM1P13688 526 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 PPICP45877 212 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 OR12D2P58182 307 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 SMIM11AP58511 58 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 TAS2R43P59537 309 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 H3F3AP84243 136 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 ST3GAL3Q11203 375 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 ZNF468Q5VIY5 522 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-214ENST00000540539 STEAP1BQ6NZ63 245 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 Q6ZVH6 145 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 MYPOPQ86VE0 399 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-214ENST00000540539 ZNF433Q8N7K0 673 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-214ENST00000540539 SUMF2Q8NBJ7 301 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 OR4K1Q8NGD4 311 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 C15orf40Q8WUR7 153 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 KCNE4Q8WWG9 221 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 NEIL2Q969S2 332 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 MIB2Q96AX9 1013 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms