RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 NDEL1Q9GZM8 345 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 HDHD2Q9H0R4 259 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 ANKRD19PQ9H560 264 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 BEX1Q9HBH7 125 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 NRIP3Q9NQ35 241 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 GID8Q9NWU2 228 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 CLN8Q9UBY8 286 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 SIGLEC7Q9Y286 467 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 TMEM5Q9Y2B1 443 aa11.31□□□□□ -0.6
SS18-204ENST00000539244 COA3Q9Y2R0 106 aaPredicted RBP11.31□□□□□ -0.6
SS18-204ENST00000539244 F5H5P2 479 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 PTP4A3O75365 173 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 RAG2P55895 527 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 RPL15P61313 204 aaKnown RBP11.3□□□□□ -0.6
SS18-204ENST00000539244 FGF12P61328 243 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 RELBQ01201 579 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 KRTAP27-1Q3LI81 207 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 FAM201AQ5SY85 155 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 GPR157Q5UAW9 335 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 OTPQ5XKR4 325 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 OLFML2AQ68BL7 652 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 PGM2L1Q6PCE3 622 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 BRD3OSQ6XYD6 125 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 GJC3Q8NFK1 279 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 ZDHHC16Q969W1 377 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 NUAK2Q9H093 628 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 C1RLQ9NZP8 487 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 PDP1Q9P0J1 537 aaPredicted RBP11.3□□□□□ -0.6
SS18-204ENST00000539244 AP3M1Q9Y2T2 418 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 LHFPL6Q9Y693 200 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 POMT1Q9Y6A1 747 aa11.3□□□□□ -0.6
SS18-204ENST00000539244 NOTCH1P46531 2555 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 C22orf46C9J442 243 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 IMPA2O14732 288 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 ENSAO43768 121 aaKnown RBP11.29□□□□□ -0.6
SS18-204ENST00000539244 NDUFB2O95178 105 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 TXNDC12O95881 172 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 SELEP16581 610 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 FPR3P25089 353 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 CD200P41217 278 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 NPY4RP50391 375 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 RAD23AP54725 363 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 COX10Q12887 443 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 MAB21L1Q13394 359 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 RSPO1Q2MKA7 263 aaPredicted RBP11.29□□□□□ -0.6
SS18-204ENST00000539244 IFI44LQ53G44 452 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 FIP1L1Q6UN15 594 aaKnown RBP11.29□□□□□ -0.6
SS18-204ENST00000539244 LYPD2Q6UXB3 125 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 C17orf107Q6ZR85 190 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 PTCHD4Q6ZW05 846 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 CBLL1Q75N03 491 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 KIR3DL3Q8N743 410 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 SLC7A13Q8TCU3 470 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 FAM71F1Q96KD3 344 aaPredicted RBP11.29□□□□□ -0.6
SS18-204ENST00000539244 CDADC1Q9BWV3 514 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 CHIAQ9BZP6 476 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 SAR1AQ9NR31 198 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 TMEM100Q9NV29 134 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 CMTM6Q9NX76 183 aa11.29□□□□□ -0.6
SS18-204ENST00000539244 IGHV3-64DA0A0J9YX35 117 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 CLPSL1A2RUU4 121 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 TNFRSF13BO14836 293 aaPredicted RBP11.28□□□□□ -0.6
SS18-204ENST00000539244 CRYBA1P05813 215 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 LIPFP07098 398 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 IRF2P14316 349 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 MMP9P14780 707 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 CRABP1P29762 137 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 FXYD6P3P58550 94 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 SRSF4Q08170 494 aaKnown RBP11.28□□□□□ -0.6
SS18-204ENST00000539244 CLEC12AQ5QGZ9 265 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 RHOUQ7L0Q8 258 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 RRM2BQ7LG56 351 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 TSEN54Q7Z6J9 526 aaKnown RBP11.28□□□□□ -0.6
SS18-204ENST00000539244 ARPINQ7Z6K5 226 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 BHLHE23Q8NDY6 225 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 FAM46AQ96IP4 442 aaKnown RBP11.28□□□□□ -0.6
SS18-204ENST00000539244 HCAR1Q9BXC0 346 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 MMP27Q9H306 513 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 MARCH7Q9H992 704 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 POLR1DQ9Y2S0 133 aa11.28□□□□□ -0.6
SS18-204ENST00000539244 LOC100653049A0A140TA62 436 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 A0A1W2PRQ8 180 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 M0QZ24 198 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 P2RY10O00398 339 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 DCTN6O00399 190 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 CXCR6O00574 342 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 SOCS2O14508 198 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 TIMM23O14925 209 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 KRT34O76011 436 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 PTBP3O95758 552 aaKnown RBP11.27□□□□□ -0.61
SS18-204ENST00000539244 HLA-DPB1P04440 258 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 MELTFP08582 738 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 ACSM4P0C7M7 580 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 CFHR2P36980 270 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 CDKN2AP42771 156 aaKnown RBP11.27□□□□□ -0.61
SS18-204ENST00000539244 OMPP47874 163 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 DGCR6Q14129 220 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 GK2Q14410 553 aaPredicted RBP11.27□□□□□ -0.61
SS18-204ENST00000539244 CD276Q5ZPR3 534 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 DNM1P34Q6PK57 102 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms