RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 RAB35Q15286 201 aa18.57■□□□□ 0.56
VPS28-212ENST00000530836 GUSBP1Q15486 140 aa18.57■□□□□ 0.56
VPS28-212ENST00000530836 ZNF585AQ6P3V2 769 aa18.57■□□□□ 0.56
VPS28-212ENST00000530836 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.57■□□□□ 0.56
VPS28-212ENST00000530836 DPPA2Q7Z7J5 298 aa18.57■□□□□ 0.56
VPS28-212ENST00000530836 FBXO17Q96EF6 278 aa18.57■□□□□ 0.56
VPS28-212ENST00000530836 DERL3Q96Q80 235 aa18.57■□□□□ 0.56
VPS28-212ENST00000530836 BARHL1Q9BZE3 327 aa18.57■□□□□ 0.56
VPS28-212ENST00000530836 C6orf62Q9GZU0 229 aaPredicted RBP18.57■□□□□ 0.56
VPS28-212ENST00000530836 TP63Q9H3D4 680 aaPredicted RBP18.57■□□□□ 0.56
VPS28-212ENST00000530836 PLEK2Q9NYT0 353 aa18.57■□□□□ 0.56
VPS28-212ENST00000530836 NUFIP1Q9UHK0 495 aaKnown RBP18.57■□□□□ 0.56
VPS28-212ENST00000530836 CACNA1CQ13936 2221 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 SGCEO43556 437 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 IGHV3-9P01782 118 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 CCDC92Q53HC0 331 aaPredicted RBP18.56■□□□□ 0.56
VPS28-212ENST00000530836 ELMOD2Q8IZ81 293 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 SPTSSAQ969W0 71 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 SH3GL3Q99963 347 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 SLITRK2Q9H156 845 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 SH3BGRL2Q9UJC5 107 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 SLC22A13Q9Y226 551 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 PHF3Q92576 2039 aaKnown RBP18.56■□□□□ 0.56
VPS28-212ENST00000530836 A0A1B0GUH1 482 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 PDCD5O14737 125 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 TMEM127O75204 238 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 CRHP06850 196 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 SRMP19623 302 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 ACHEP22303 614 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 MPGP29372 298 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 ARF1P84077 181 aaKnown RBP18.56■□□□□ 0.56
VPS28-212ENST00000530836 FAPQ12884 760 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 SLC36A2Q495M3 483 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 C4orf17Q53FE4 359 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 PBOV1Q9GZY1 135 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 PPIL3Q9H2H8 161 aaKnown RBP18.56■□□□□ 0.56
VPS28-212ENST00000530836 HMG20AQ9NP66 347 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 NOX4Q9NPH5 578 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 HHLA2Q9UM44 414 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 SLC5A6Q9Y289 635 aa18.56■□□□□ 0.56
VPS28-212ENST00000530836 HELZ2Q9BYK8 2649 aaKnown RBP18.55■□□□□ 0.56
VPS28-212ENST00000530836 MBD3L4A6NDZ8 208 aaPredicted RBP18.55■□□□□ 0.56
VPS28-212ENST00000530836 MBD3L3A6NE82 208 aaPredicted RBP18.55■□□□□ 0.56
VPS28-212ENST00000530836 MBD3L5A6NJ08 208 aaPredicted RBP18.55■□□□□ 0.56
VPS28-212ENST00000530836 DVL2O14641 736 aa18.55■□□□□ 0.56
VPS28-212ENST00000530836 CD2P06729 351 aa18.55■□□□□ 0.56
VPS28-212ENST00000530836 CLEC2LP0C7M8 214 aa18.55■□□□□ 0.56
VPS28-212ENST00000530836 OTX1P32242 354 aaPredicted RBP18.55■□□□□ 0.56
VPS28-212ENST00000530836 GTF3C1Q12789 2109 aa18.55■□□□□ 0.56
VPS28-212ENST00000530836 FAM27D1Q5T7N8 215 aa18.55■□□□□ 0.56
VPS28-212ENST00000530836 C3P1Q6ZMU1 363 aa18.55■□□□□ 0.56
VPS28-212ENST00000530836 ZNF283Q8N7M2 679 aa18.55■□□□□ 0.56
VPS28-212ENST00000530836 OR6K3Q8NGY3 331 aa18.55■□□□□ 0.56
VPS28-212ENST00000530836 MBD3L2Q8NHZ7 208 aaPredicted RBP18.55■□□□□ 0.56
VPS28-212ENST00000530836 C12orf49Q9H741 205 aa18.55■□□□□ 0.56
VPS28-212ENST00000530836 PLEKHB1Q9UF11 243 aaPredicted RBP18.55■□□□□ 0.56
VPS28-212ENST00000530836 ATPIF1Q9UII2 106 aa18.55■□□□□ 0.56
VPS28-212ENST00000530836 TRBV5-7A0A0A0MS05 114 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 SHISA3A0PJX4 238 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 INHBBP09529 407 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 RAB3BP20337 219 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 CX3CR1P49238 355 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 BMXP51813 675 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 DYNC1I2Q13409 638 aaKnown RBP18.54■□□□□ 0.56
VPS28-212ENST00000530836 SKA3Q8IX90 412 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 TSEN15Q8WW01 171 aaKnown RBP18.54■□□□□ 0.56
VPS28-212ENST00000530836 ACOT12Q8WYK0 555 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 TMEM106AQ96A25 262 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 KCTD12Q96CX2 325 aaKnown RBP18.54■□□□□ 0.56
VPS28-212ENST00000530836 ZFP3Q96NJ6 502 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 WDR12Q9GZL7 423 aaKnown RBP18.54■□□□□ 0.56
VPS28-212ENST00000530836 SP140LQ9H930 580 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 TCF7L1Q9HCS4 588 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 DHDHQ9UQ10 334 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 MEMO1Q9Y316 297 aa18.54■□□□□ 0.56
VPS28-212ENST00000530836 E9PLN8 166 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 CCL21O00585 134 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 DOK2O60496 412 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 ZNF32P17041 273 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 PSMD7P51665 324 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 ZNF121P58317 390 aaPredicted RBP18.53■□□□□ 0.56
VPS28-212ENST00000530836 TGFBR3Q03167 851 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 RTL6Q6ICC9 239 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 FJX1Q86VR8 437 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 RDH10Q8IZV5 341 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 C9orf106Q8NAJ2 232 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 OR1F12Q8NHA8 337 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 KCNS3Q9BQ31 491 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 VKORC1Q9BQB6 163 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 OR2H1Q9GZK4 316 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 PRSS50Q9UI38 385 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 FLNCQ14315 2725 aa18.53■□□□□ 0.56
VPS28-212ENST00000530836 CLDN25C9JDP6 229 aa18.52■□□□□ 0.56
VPS28-212ENST00000530836 SYNGR3O43761 229 aa18.52■□□□□ 0.56
VPS28-212ENST00000530836 PRKXP51817 358 aa18.52■□□□□ 0.56
VPS28-212ENST00000530836 ZNF846Q147U1 533 aa18.52■□□□□ 0.56
VPS28-212ENST00000530836 ODF4Q2M2E3 257 aa18.52■□□□□ 0.56
VPS28-212ENST00000530836 MZT2AQ6P582 158 aa18.52■□□□□ 0.56
VPS28-212ENST00000530836 ANKRD16Q6P6B7 361 aa18.52■□□□□ 0.56
VPS28-212ENST00000530836 TFAP2EQ6VUC0 442 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms