RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 YKT6O15498 198 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 CDC40O60508 579 aaKnown RBP eCLIP12.73□□□□□ -0.37
USP48-213ENST00000529637 CXADRP78310 365 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 IL13RA1P78552 427 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 RAB11BQ15907 218 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 SKA3Q8IX90 412 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 ZSCAN4Q8NAM6 433 aaPredicted RBP12.73□□□□□ -0.37
USP48-213ENST00000529637 GPR148Q8TDV2 347 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 HIST1H2BAQ96A08 127 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 RNF126Q9BV68 326 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 UBQLN4Q9NRR5 601 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 PRR13Q9NZ81 148 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 TMEM184BQ9Y519 407 aaPredicted RBP12.73□□□□□ -0.37
USP48-213ENST00000529637 IGKV1D-42A0A075B6H8 117 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 C9orf170A2RU37 121 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 F8VVB4 439 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 F8VWA3 439 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 NPIPB9F8W1W9 429 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 ARPC3O15145 178 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 CYB5AP00167 134 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 TPT1P13693 172 aaKnown RBP12.73□□□□□ -0.37
USP48-213ENST00000529637 AKR1C4P17516 323 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 HGFACQ04756 655 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 BIKQ13323 160 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 WDR38Q5JTN6 314 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 SLC35D3Q5M8T2 416 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 SLC16A9Q7RTY1 509 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 LYG2Q86SG7 212 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 SLC30A7Q8NEW0 376 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 STOML3Q8TAV4 291 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 FOXRED1Q96CU9 486 aaPredicted RBP12.73□□□□□ -0.37
USP48-213ENST00000529637 KTI12Q96EK9 354 aaPredicted RBP12.73□□□□□ -0.37
USP48-213ENST00000529637 S1PR5Q9H228 398 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 SYT4Q9H2B2 425 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 PRMT8Q9NR22 394 aaPredicted RBP12.73□□□□□ -0.37
USP48-213ENST00000529637 C5orf51A6NDU8 294 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 TMEM127O75204 238 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 S100A8P05109 93 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 TACR3P29371 465 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 ARL4DP49703 201 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 TMEM151BQ8IW70 566 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 SLC43A2Q8N370 569 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 NKD1Q969G9 470 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 INTS12Q96CB8 462 aaKnown RBP12.73□□□□□ -0.37
USP48-213ENST00000529637 NECAB3Q96P71 396 aaPredicted RBP12.73□□□□□ -0.37
USP48-213ENST00000529637 LPAR4Q99677 370 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 KLHDC3Q9BQ90 382 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 RNF122Q9H9V4 155 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 MRPS18BQ9Y676 258 aaKnown RBP12.73□□□□□ -0.37
USP48-213ENST00000529637 SPAG17Q6Q759 2223 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 C1orf196B1AJZ1 125 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 ZNF264O43296 627 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 UTS2O95399 124 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 NSA2O95478 260 aaKnown RBP12.72□□□□□ -0.37
USP48-213ENST00000529637 DAOP14920 347 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 CPT2P23786 658 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 RPL18Q07020 188 aaKnown RBP12.72□□□□□ -0.37
USP48-213ENST00000529637 ZNF74Q16587 644 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 C9orf152Q5JTZ5 239 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 LPCAT3Q6P1A2 487 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 RTN4RL2Q86UN3 420 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.72□□□□□ -0.37
USP48-213ENST00000529637 TSLPQ969D9 159 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 CMBLQ96DG6 245 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 CHMP1AQ9HD42 196 aaPredicted RBP12.72□□□□□ -0.37
USP48-213ENST00000529637 WIPF3A6NGB9 483 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 TMEM150CB9EJG8 249 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 CLN5O75503 358 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 ERCC1P07992 297 aaPredicted RBP12.72□□□□□ -0.37
USP48-213ENST00000529637 PNMTP11086 282 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 NQO2P16083 231 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 ELOCQ15369 112 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 CDNFQ49AH0 187 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 GLYATL3Q5SZD4 288 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 TMEM184AQ6ZMB5 413 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 SLC35D2Q76EJ3 337 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 TCTN2Q96GX1 697 aa12.72□□□□□ -0.37
USP48-213ENST00000529637 PAPOLGQ9BWT3 736 aaKnown RBP12.72□□□□□ -0.37
USP48-213ENST00000529637 IGHV5-51A0A0C4DH38 117 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 DCDC2BA2VCK2 349 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 RNASEK-C17orf49H0YIS7 233 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 SLC17A2O00624 439 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 CRHP06850 196 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 CXCR1P25024 350 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 PSMB6P28072 239 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 CD80P33681 288 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 SERPINF1P36955 418 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 DEFB133Q30KQ1 61 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 HLA-DQA1Q5Y7H0 255 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 SLC25A42Q86VD7 318 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 ZNF440Q8IYI8 595 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 OR51A2Q8NGJ7 313 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 MITD1Q8WV92 249 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 ZNF775Q96BV0 537 aaPredicted RBP12.71□□□□□ -0.37
USP48-213ENST00000529637 CYYR1Q96J86 154 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 SLC41A2Q96JW4 573 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 LRFN5Q96NI6 719 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 WDR77Q9BQA1 342 aaPredicted RBP12.71□□□□□ -0.37
USP48-213ENST00000529637 COMMD4Q9H0A8 199 aa12.71□□□□□ -0.37
USP48-213ENST00000529637 PDE7BQ9NP56 450 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms