RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 N6AMT1Q9Y5N5 214 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 PMF1-BGLAPU3KQ54 211 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 SHISA3A0PJX4 238 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 OR6C6A6NF89 314 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 ACHEP22303 614 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 IGHV1-2P23083 117 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 CEACAM8P31997 349 aaPredicted RBP18.38■□□□□ 0.53
VPS28-208ENST00000527797 OTX1P32242 354 aaPredicted RBP18.38■□□□□ 0.53
VPS28-208ENST00000527797 ARR3P36575 388 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 SOX2P48431 317 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 HSD17B12Q53GQ0 312 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 OR10AC1Q8NH08 325 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 MCFD2Q8NI22 146 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 TSEN15Q8WW01 171 aaKnown RBP18.38■□□□□ 0.53
VPS28-208ENST00000527797 SLC24A3Q9HC58 644 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 HHLA2Q9UM44 414 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 A3GALT2U3KPV4 340 aa18.38■□□□□ 0.53
VPS28-208ENST00000527797 TRAV1-2A0A0B4J238 106 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 M0R135 149 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 CGAP01215 116 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 HLA-HP01893 362 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 TTRP02766 147 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 ANXA2P07355 339 aaKnown RBP18.37■□□□□ 0.53
VPS28-208ENST00000527797 GLI4P10075 376 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 SLC2A1P11166 492 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 CD79AP11912 226 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 CRYGSP22914 178 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 MAGEB1P43366 347 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 HTR5AP47898 357 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 SLC6A9P48067 706 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 TPTEP56180 551 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 RSPO1Q2MKA7 263 aaPredicted RBP18.37■□□□□ 0.53
VPS28-208ENST00000527797 PABPC1L2AQ5JQF8 200 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 TMEM53Q6P2H8 277 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 LUZP2Q86TE4 346 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 NANOS1Q8WY41 292 aaKnown RBP18.37■□□□□ 0.53
VPS28-208ENST00000527797 SLC7A6Q92536 515 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 ZNF799Q96GE5 643 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 MMP27Q9H306 513 aa18.37■□□□□ 0.53
VPS28-208ENST00000527797 ERVH48-1M5A8F1 160 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 PIN1P1O15428 100 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 UBL3O95164 117 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 RAF1P04049 648 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 HNRNPA0Q13151 305 aaKnown RBP18.36■□□□□ 0.53
VPS28-208ENST00000527797 TBRG1Q3YBR2 411 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 HIKESHIQ53FT3 197 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 DRAM2Q6UX65 266 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 FAM57BQ71RH2 274 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 NAXEQ8NCW5 288 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 OR51A4Q8NGJ6 313 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 TBC1D15Q8TC07 691 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 BARHL1Q9BZE3 327 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 CXorf56Q9H5V9 222 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 SLC17A5Q9NRA2 495 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 ATPIF1Q9UII2 106 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 DHDHQ9UQ10 334 aa18.36■□□□□ 0.53
VPS28-208ENST00000527797 LOC107986453A0A1B0GWG9 222 aa18.35■□□□□ 0.53
VPS28-208ENST00000527797 CIB4A0PJX0 185 aa18.35■□□□□ 0.53
VPS28-208ENST00000527797 H3BSH0 61 aa18.35■□□□□ 0.53
VPS28-208ENST00000527797 P2RY10O00398 339 aa18.35■□□□□ 0.53
VPS28-208ENST00000527797 DBHP09172 617 aa18.35■□□□□ 0.53
VPS28-208ENST00000527797 LY6DQ14210 128 aa18.35■□□□□ 0.53
VPS28-208ENST00000527797 PRSS45Q7RTY3 260 aa18.35■□□□□ 0.53
VPS28-208ENST00000527797 CCDC36Q8IYA8 594 aa18.35■□□□□ 0.53
VPS28-208ENST00000527797 ZNF610Q8N9Z0 462 aa18.35■□□□□ 0.53
VPS28-208ENST00000527797 OR8B12Q8NGG6 310 aa18.35■□□□□ 0.53
VPS28-208ENST00000527797 TMEM106AQ96A25 262 aa18.35■□□□□ 0.53
VPS28-208ENST00000527797 PGAM5Q96HS1 289 aa18.35■□□□□ 0.53
VPS28-208ENST00000527797 SFXN3Q9BWM7 321 aa18.35■□□□□ 0.53
VPS28-208ENST00000527797 NXF2Q9GZY0 626 aaKnown RBP18.35■□□□□ 0.53
VPS28-208ENST00000527797 OPN3Q9H1Y3 402 aaPredicted RBP18.35■□□□□ 0.53
VPS28-208ENST00000527797 TRBV5-7A0A0A0MS05 114 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 SMIM30A4D0T7 59 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 ACSM4P0C7M7 580 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 SRMP19623 302 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 RAB1AP62820 205 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 KRTAP27-1Q3LI81 207 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 BEND4Q6ZU67 534 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 NAA40Q86UY6 237 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 GABRG1Q8N1C3 465 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 ZNF433Q8N7K0 673 aaPredicted RBP18.34■□□□□ 0.53
VPS28-208ENST00000527797 TINAGQ9UJW2 476 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 MED12LQ86YW9 2145 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 CACNA1CQ13936 2221 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 A0A1B0GVI7 797 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 RAD51DO75771 328 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 LYZL6O75951 148 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 CD2P06729 351 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 COX5BP10606 129 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 COX5AP20674 150 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 PMPCAQ10713 525 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 CPEB3Q8NE35 698 aaKnown RBP18.34■□□□□ 0.53
VPS28-208ENST00000527797 OR13C3Q8NGS6 347 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 OR51E1Q8TCB6 317 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 ASB5Q8WWX0 329 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 KCNS3Q9BQ31 491 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 C6orf62Q9GZU0 229 aaPredicted RBP18.34■□□□□ 0.53
VPS28-208ENST00000527797 SLITRK2Q9H156 845 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 SP140LQ9H930 580 aa18.34■□□□□ 0.53
VPS28-208ENST00000527797 TCF7L1Q9HCS4 588 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms