RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 OR4Q3Q8NH05 313 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 SPTSSAQ969W0 71 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 HCAR1Q9BXC0 346 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 NMNAT2Q9BZQ4 307 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 POFUT1Q9H488 388 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 CMC2Q9NRP2 79 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 ARMC1Q9NVT9 282 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 POMPQ9Y244 141 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 TCRBV3S1A0A5B6 114 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 IFNL4K9M1U5 179 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 E2F6O75461 281 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 ACSM4P0C7M7 580 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 PYCR1P32322 319 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 TPTEP56180 551 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 CR1LQ2VPA4 569 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 PAPD5Q8NDF8 572 aaKnown RBP17.49■□□□□ 0.39
VPS28-206ENST00000526734 OR51F2Q8NH61 342 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 CCL17Q92583 94 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 NIPSNAP1Q9BPW8 284 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 ZNF556Q9HAH1 456 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 PNRC2Q9NPJ4 139 aaKnown RBP17.49■□□□□ 0.39
VPS28-206ENST00000526734 DDX28Q9NUL7 540 aaKnown RBP17.49■□□□□ 0.39
VPS28-206ENST00000526734 PTTG3PQ9NZH4 202 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 IL19Q9UHD0 177 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 WIPI2Q9Y4P8 454 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 COMMD3-BMI1R4GMX3 469 aa17.49■□□□□ 0.39
VPS28-206ENST00000526734 H3BN98 237 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 ATP5HO75947 161 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 MSMBP08118 114 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 ANXA8P13928 327 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 SPI1P17947 270 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 LMO4P61968 165 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 MVKQ03426 396 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 BNIP1Q12981 228 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 MALLQ13021 153 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 PCK2Q16822 640 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 TEX30Q5JUR7 227 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 OR8G5Q8NG78 346 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 OR2Z1Q8NG97 314 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 OR9Q1Q8NGQ5 310 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 DNAJC9Q8WXX5 260 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 ZNF582Q96NG8 517 aaPredicted RBP17.48■□□□□ 0.39
VPS28-206ENST00000526734 NARFLQ9H6Q4 476 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 ZNF665Q9H7R5 613 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 TREM2Q9NZC2 230 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 PDP1Q9P0J1 537 aaPredicted RBP17.48■□□□□ 0.39
VPS28-206ENST00000526734 DNAJB9Q9UBS3 223 aa17.48■□□□□ 0.39
VPS28-206ENST00000526734 TMEFF2Q9UIK5 374 aaPredicted RBP17.48■□□□□ 0.39
VPS28-206ENST00000526734 ANK3Q12955 4377 aaKnown RBP17.47■□□□□ 0.39
VPS28-206ENST00000526734 IQCF6A8MYZ5 107 aa17.47■□□□□ 0.39
VPS28-206ENST00000526734 F5H5K5 113 aa17.47■□□□□ 0.39
VPS28-206ENST00000526734 FKBP6O75344 327 aa17.47■□□□□ 0.39
VPS28-206ENST00000526734 PAICSP22234 425 aaKnown RBP17.47■□□□□ 0.39
VPS28-206ENST00000526734 ENTPD1P49961 510 aa17.47■□□□□ 0.39
VPS28-206ENST00000526734 CBX1P83916 185 aa17.47■□□□□ 0.39
VPS28-206ENST00000526734 RSPO1Q2MKA7 263 aaPredicted RBP17.47■□□□□ 0.39
VPS28-206ENST00000526734 ACSM5Q6NUN0 579 aa17.47■□□□□ 0.39
VPS28-206ENST00000526734 Q6ZR03 302 aa17.47■□□□□ 0.39
VPS28-206ENST00000526734 TEX29Q8N6K0 151 aa17.47■□□□□ 0.39
VPS28-206ENST00000526734 OR13G1Q8NGZ3 307 aa17.47■□□□□ 0.39
VPS28-206ENST00000526734 TMEM186Q96B77 213 aa17.47■□□□□ 0.39
VPS28-206ENST00000526734 MAP6Q96JE9 813 aa17.47■□□□□ 0.39
VPS28-206ENST00000526734 MALRD1Q5VYJ5 2156 aa17.46■□□□□ 0.39
VPS28-206ENST00000526734 TRAV20A0A0B4J274 112 aa17.46■□□□□ 0.39
VPS28-206ENST00000526734 M0R135 149 aa17.46■□□□□ 0.39
VPS28-206ENST00000526734 OTX1P32242 354 aaPredicted RBP17.46■□□□□ 0.39
VPS28-206ENST00000526734 AVPI1Q5T686 147 aa17.46■□□□□ 0.39
VPS28-206ENST00000526734 DRAM2Q6UX65 266 aa17.46■□□□□ 0.39
VPS28-206ENST00000526734 NRBF2Q96F24 287 aa17.46■□□□□ 0.39
VPS28-206ENST00000526734 ZNF799Q96GE5 643 aa17.46■□□□□ 0.39
VPS28-206ENST00000526734 TEX12Q9BXU0 123 aa17.46■□□□□ 0.39
VPS28-206ENST00000526734 MMADHCQ9H3L0 296 aaPredicted RBP17.46■□□□□ 0.39
VPS28-206ENST00000526734 NOP16Q9Y3C1 178 aaKnown RBP17.46■□□□□ 0.39
VPS28-206ENST00000526734 CACNG2Q9Y698 323 aa17.46■□□□□ 0.39
VPS28-206ENST00000526734 TVP23AA6NH52 213 aa17.45■□□□□ 0.38
VPS28-206ENST00000526734 FAM157AC9JC47 383 aa17.45■□□□□ 0.38
VPS28-206ENST00000526734 WNT9BO14905 357 aa17.45■□□□□ 0.38
VPS28-206ENST00000526734 GSC2O15499 205 aa17.45■□□□□ 0.38
VPS28-206ENST00000526734 DEAF1O75398 565 aaPredicted RBP17.45■□□□□ 0.38
VPS28-206ENST00000526734 LCATP04180 440 aa17.45■□□□□ 0.38
VPS28-206ENST00000526734 OSMP13725 252 aa17.45■□□□□ 0.38
VPS28-206ENST00000526734 SRP9P49458 86 aaKnown RBP17.45■□□□□ 0.38
VPS28-206ENST00000526734 HLXQ14774 488 aaPredicted RBP17.45■□□□□ 0.38
VPS28-206ENST00000526734 OR2T2Q6IF00 324 aa17.45■□□□□ 0.38
VPS28-206ENST00000526734 DCXRQ7Z4W1 244 aa17.45■□□□□ 0.38
VPS28-206ENST00000526734 ZNF283Q8N7M2 679 aa17.45■□□□□ 0.38
VPS28-206ENST00000526734 OR6K6Q8NGW6 343 aa17.45■□□□□ 0.38
VPS28-206ENST00000526734 GAL3ST1Q99999 423 aa17.45■□□□□ 0.38
VPS28-206ENST00000526734 CADM1Q9BY67 442 aaKnown RBP17.45■□□□□ 0.38
VPS28-206ENST00000526734 TMEM106BQ9NUM4 274 aa17.45■□□□□ 0.38
VPS28-206ENST00000526734 A0A1B0GWJ7 208 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 ZNF878C9JN71 531 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 IGHV2-5P01817 119 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 HMGN1P05114 100 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 SPARCP09486 303 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 SLC15A1P46059 708 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 ERFP50548 548 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 DBPQ10586 325 aaPredicted RBP17.44■□□□□ 0.38
VPS28-206ENST00000526734 TMEM179BQ7Z7N9 219 aa17.44■□□□□ 0.38
VPS28-206ENST00000526734 ATG16L2Q8NAA4 619 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms