RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 BCL2L14Q9BZR8 327 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 IMPAD1Q9NX62 359 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 H2AFY2Q9P0M6 372 aaPredicted RBP8.71□□□□□ -1.02
VPS28-204ENST00000526054 CYB5R1Q9UHQ9 305 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 LOC100509620A0A075B734 347 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 IGHV4-61A0A0C4DH41 118 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 LOC100289279A0A1B0GTE1 492 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 LOC390937A0A1W2PQ73 354 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 OR6C6A6NF89 314 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 B9A039 149 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 SYNGR3O43761 229 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 ABHD16AO95870 558 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 OR4A8P0C604 315 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 FAM157BP0CG42 384 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 SLC2A5P22732 501 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 THBS4P35443 961 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 POLR2IP36954 125 aaKnown RBP8.7□□□□□ -1.02
VPS28-204ENST00000526054 RAD52P43351 418 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 PPOXP50336 477 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 HIST1H3AP68431 136 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 ECH1Q13011 328 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 APOFQ13790 326 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 EFNB3Q15768 340 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 ADIPOQQ15848 244 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 CCDC92Q53HC0 331 aaPredicted RBP8.7□□□□□ -1.02
VPS28-204ENST00000526054 TEX30Q5JUR7 227 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 FAM120AOSQ5T036 256 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 HIST2H3PS2Q5TEC6 136 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 NXNL2Q5VZ03 156 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 LYPD4Q6UWN0 246 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 IZUMO2Q6UXV1 221 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 CFAP77Q6ZQR2 320 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 HIST2H3AQ71DI3 136 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 SHFQ7M4L6 423 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 C1orf174Q8IYL3 243 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 PAQR4Q8N4S7 273 aaPredicted RBP8.7□□□□□ -1.02
VPS28-204ENST00000526054 ZNF555Q8NEP9 628 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 BBS1Q8NFJ9 593 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 OR8J1Q8NGP2 316 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 FAM81AQ8TBF8 368 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 IPCEF1Q8WWN9 437 aaPredicted RBP8.7□□□□□ -1.02
VPS28-204ENST00000526054 MSI2Q96DH6 328 aaKnown RBP8.7□□□□□ -1.02
VPS28-204ENST00000526054 ZMYND19Q96E35 227 aaPredicted RBP8.7□□□□□ -1.02
VPS28-204ENST00000526054 HRASLS5Q96KN8 279 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 IL4I1Q96RQ9 567 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 DCLRE1CQ96SD1 692 aaKnown RBP8.7□□□□□ -1.02
VPS28-204ENST00000526054 PITX2Q99697 317 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 BPESC1Q9GZL8 116 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 TOR3AQ9H497 397 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 WDR76Q9H967 626 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 MARCH7Q9H992 704 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 ELOVL3Q9HB03 270 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 SMPD3Q9NY59 655 aaPredicted RBP8.7□□□□□ -1.02
VPS28-204ENST00000526054 CMAHPQ9Y471 501 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 GMPPBQ9Y5P6 360 aa8.7□□□□□ -1.02
VPS28-204ENST00000526054 ANK2Q01484 3957 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 SLC22A31A6NKX4 558 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 H0YJX3 145 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 M0R129 80 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 ZNF593O00488 134 aaPredicted RBP8.69□□□□□ -1.02
VPS28-204ENST00000526054 ICMTO60725 284 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 LCKP06239 509 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 ERCC1P07992 297 aaPredicted RBP8.69□□□□□ -1.02
VPS28-204ENST00000526054 THBS2P35442 1172 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 HSPA13P48723 471 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 RGS6P49758 472 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 UCP2P55851 309 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 EIF2B1Q14232 305 aaKnown RBP8.69□□□□□ -1.02
VPS28-204ENST00000526054 PCK2Q16822 640 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 RGS7BPQ6MZT1 257 aaPredicted RBP8.69□□□□□ -1.02
VPS28-204ENST00000526054 TMEM154Q6P9G4 183 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 DCXRQ7Z4W1 244 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 TIGD4Q8IY51 512 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 GALNT4Q8N4A0 578 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 ZNF454Q8N9F8 522 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 ZNF540Q8NDQ6 660 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 ABHD4Q8TB40 342 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 TRUB1Q8WWH5 349 aaKnown RBP8.69□□□□□ -1.02
VPS28-204ENST00000526054 SPTSSAQ969W0 71 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 MRPL24Q96A35 216 aaKnown RBP8.69□□□□□ -1.02
VPS28-204ENST00000526054 C4orf45Q96LM5 186 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 COG8Q96MW5 612 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 MBOAT4Q96T53 435 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 ZNF184Q99676 751 aaPredicted RBP8.69□□□□□ -1.02
VPS28-204ENST00000526054 ATF6BQ99941 703 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 C19orf24Q9BVV8 132 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 RAB1BQ9H0U4 201 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 OR51B6Q9H340 312 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 PLK3Q9H4B4 646 aa8.69□□□□□ -1.02
VPS28-204ENST00000526054 FBXO9Q9UK97 447 aaPredicted RBP8.69□□□□□ -1.02
VPS28-204ENST00000526054 NBEAL1Q6ZS30 2694 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 CCDC182A6NF36 153 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 ZNF878C9JN71 531 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 J3QW42 95 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 MPZL2O60487 215 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 SELENOFO60613 162 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 TGFAP01135 160 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 WNT5AP41221 380 aa8.68□□□□□ -1.02
VPS28-204ENST00000526054 NAA10P41227 235 aaPredicted RBP8.68□□□□□ -1.02
VPS28-204ENST00000526054 RPS27P42677 84 aaKnown RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms