RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CMBLQ96DG6 245 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 C14orf79Q96F83 325 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 MS4A7Q9GZW8 240 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 ZMIZ1Q9ULJ6 1067 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 PCDHB10Q9UN67 800 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 PUS1Q9Y606 427 aaKnown RBP eCLIP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 A0A1B0GX78 115 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 STMND1H3BQB6 276 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 SLC33A1O00400 549 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF728P0DKX0 622 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 THBS2P35442 1172 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 AFF3P51826 1226 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 RBM39Q14498 530 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 DOK3Q7L591 496 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 CDC20BQ86Y33 519 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 HSD17B11Q8NBQ5 300 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 GPR84Q9NQS5 396 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF275Q9NSD4 429 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 RPS10-NUDT3A0A1W2PQS6 291 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 GJE1A6NN92 205 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 TNFSF14O43557 240 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 DBHP09172 617 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 EPHA1P21709 976 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 CASRP41180 1078 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 RPS10P46783 165 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 PNLIPRP2P54317 469 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 CD226Q15762 336 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 USF2Q15853 346 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 TUSC1Q2TAM9 212 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 OGFOD3Q6PK18 319 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 CMTM1Q8IZ96 169 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 OR6K3Q8NGY3 331 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 FAM213BQ8TBF2 198 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF286AQ9HBT8 521 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 MMP17Q9ULZ9 603 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 PCDHGA1Q9Y5H4 931 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 URB1O60287 2271 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 CCDC163A0A0D9SF12 145 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 DDAH2O95865 285 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 IGF2P01344 180 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 THY1P04216 161 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 P04436 131 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 HOXC4P09017 264 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 LAP3P28838 519 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 EFNA3P52797 238 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 PLGLB1Q02325 96 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 ISXQ2M1V0 245 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 MESTQ5EB52 335 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 TMEM65Q6PI78 240 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 SEZ6L2Q6UXD5 910 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 DTWD2Q8NBA8 298 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 TERB2Q8NHR7 220 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 C12orf10Q9HB07 376 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 NDRG3Q9UGV2 375 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 SPTY2D1-AS1A0A0U1RR47 76 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 TBX6O95947 436 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 COL9A1P20849 921 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 OMGP23515 440 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 CD96P40200 585 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 SLC35A1P78382 337 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 GGTLC2Q14390 218 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 GPR157Q5UAW9 335 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 BEND4Q6ZU67 534 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 P4HA3Q7Z4N8 544 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 ATG4DQ86TL0 474 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 OR51A4Q8NGJ6 313 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 OR5M9Q8NGP3 310 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 FBXW5Q969U6 566 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 KCNE5Q9UJ90 142 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 CCDC85CA6NKD9 419 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 TAAR5O14804 337 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 GRB2P62993 217 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 S100A12P80511 92 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 PLCXD3Q63HM9 321 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 FAM199XQ6PEV8 388 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 UQCC3Q6UW78 93 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 MOB3CQ70IA8 216 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 LRRTM1Q86UE6 522 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 ZDHHC22Q8N966 263 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 PIGCQ92535 297 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF75AQ96N20 296 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 PBX4Q9BYU1 374 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 PIGLQ9Y2B2 252 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 WDR90Q96KV7 1748 aa7.57□□□□□ -1.2
LIMCH1-216ENST00000512820 KLF4O43474 513 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 SCRG1O75711 98 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 OR7C1O76099 320 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 TPPPO94811 219 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 MPC2O95563 127 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 IFNA1P01562 189 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 CD1AP06126 327 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 CTLA4P16410 223 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 EFNB2P52799 333 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 GPR85P60893 370 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 FMODQ06828 376 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 STK11Q15831 433 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 OR5M8Q8NGP6 311 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 OR1S1Q8NH92 325 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 LHFPL5Q8TAF8 219 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms