RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PAICSP22234 425 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 GCAP28676 217 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 GTF2E2P29084 291 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 SFNP31947 248 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 CD80P33681 288 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 P2RY2P41231 377 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 CSKP41240 450 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 MAGEA3P43357 314 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 SERPINB10P48595 397 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 UGT2B15P54855 530 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 TMBIM6P55061 237 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 DAOAP59103 153 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 CDC42P60953 191 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 ERVS71-1P61550 626 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 RPL23AP62750 156 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 ERVK-25P63136 954 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 DYNLL1P63167 89 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 MRPS22P82650 360 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 MRPS11P82912 194 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 TFAMQ00059 246 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 HSF2Q03933 536 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 CHRNB3Q05901 458 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 RGS1Q08116 209 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 INCA1Q0VD86 236 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 PDIA2Q13087 525 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 PDZK1IP1Q13113 114 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 BTN1A1Q13410 526 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 MADCAM1Q13477 382 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 AQP6Q13520 282 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 RCAN2Q14206 197 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 KCNJ11Q14654 390 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 MESDQ14696 234 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 GANABQ14697 944 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 CHI3L2Q15782 390 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 LY6EQ16553 131 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 ACKR1Q16570 336 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 IMPG1Q17R60 797 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 TRMT5Q32P41 509 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 RFX4Q33E94 735 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 PTPN20Q4JDL3 420 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 SBK1Q52WX2 424 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 IFI44LQ53G44 452 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 CLLU1Q5K131 121 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 PHYHD1Q5SRE7 291 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 C9orf64Q5T6V5 341 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 C9orf135Q5VTT2 229 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 PLCXD3Q63HM9 321 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 ACSM5Q6NUN0 579 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 FAHD2BQ6P2I3 314 aaPredicted RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 DCUN1D2Q6PH85 259 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 BTNL3Q6UXE8 466 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 CLEC18BQ6UXF7 455 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 IZUMO2Q6UXV1 221 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 HSDL2Q6YN16 418 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 SPNS3Q6ZMD2 512 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 Q6ZRG5 221 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 EIF3MQ7L2H7 374 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 ARPINQ7Z6K5 226 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 GALNT10Q86SR1 603 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 YRDCQ86U90 279 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 TGIF2LXQ8IUE1 241 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 ZNF547Q8IVP9 402 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 C4orf33Q8N1A6 199 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 C12orf45Q8N5I9 185 aaPredicted RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 RNF182Q8N6D2 247 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 PACRGLQ8N7B6 248 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 GDPD1Q8N9F7 314 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 GATSQ8NAP1 163 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 SIDT2Q8NBJ9 832 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 HSD17B11Q8NBQ5 300 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 RELL2Q8NC24 303 aaPredicted RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 FAM83FQ8NEG4 500 aaPredicted RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 OR52E1Q8NGJ3 308 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 OR13C9Q8NGT0 318 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 OR9A2Q8NGT5 310 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 ZFAND1Q8TCF1 268 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 GPX8Q8TED1 209 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 GLYATL2Q8WU03 294 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 C1orf54Q8WWF1 131 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 ACOT11Q8WXI4 607 aaPredicted RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 PHYHIPQ92561 330 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 ZNF707Q96C28 371 aaPredicted RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 ISOC1Q96CN7 298 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 SMIM12Q96EX1 92 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 DTD2Q96FN9 168 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 FAHD2AQ96GK7 314 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 PAGE5Q96GU1 130 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 GLT1D1Q96MS3 346 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 NRTNQ99748 197 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 AGPAT1Q99943 283 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 AIF1LQ9BQI0 150 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 SLC30A2Q9BRI3 323 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 C7orf50Q9BRJ6 194 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 NAT9Q9BTE0 207 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 GGACTQ9BVM4 153 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 ERVK-6Q9BXR3 956 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 KRTAP4-1Q9BYQ7 146 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 LRRC2Q9BYS8 371 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 IL22Q9GZX6 179 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 NXF2Q9GZY0 626 aaKnown RBP1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms