RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 C7orf33Q8WU49 177 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 TMEM239Q8WW34 195 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 GPR21Q99679 349 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 AGMATQ9BSE5 352 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 COPS4Q9BT78 406 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 C1orf198Q9H425 327 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 PAK5Q9P286 719 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 HEBP2Q9Y5Z4 205 aa3.44□□□□□ -1.86
VPS13A-212ENST00000493341 EFCAB5A4FU69 1503 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 SYCE1LA8MT33 242 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 KRTAP16-1A8MUX0 517 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 ANKRD65E5RJM6 399 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 ZMPSTE24O75844 475 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 GCGP01275 180 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 SKP1P63208 163 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 IFFO1Q0D2I5 559 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 TCP10Q12799 353 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 KIAA0040Q15053 153 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 APOBEC3HQ6NTF7 200 aaKnown RBP3.43□□□□□ -1.86
VPS13A-212ENST00000493341 RNF165Q6ZSG1 346 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 CYP4Z1Q86W10 505 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 OR10J6PQ8NGY7 276 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 RCN3Q96D15 328 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 DNAJC19Q96DA6 116 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 RASL11BQ9BPW5 248 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 UPF3BQ9BZI7 483 aaKnown RBP3.43□□□□□ -1.86
VPS13A-212ENST00000493341 OR11A1Q9GZK7 315 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 OR2S2Q9NQN1 319 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 CLEC4EQ9ULY5 219 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 TNFRSF18Q9Y5U5 241 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 TRAV8-7A0A075B6U6 113 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 IGLV1-36A0A0B4J1U3 117 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 A0A0G2JN53 185 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 DFFAO00273 331 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 XKRYO14609 159 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 SNAI2O43623 268 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 CALUO43852 315 aaPredicted RBP3.43□□□□□ -1.86
VPS13A-212ENST00000493341 TSPOAP1O95153 1857 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 GNAO1P09471 354 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 PGA5P0DJD9 388 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 CD37P11049 281 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 RBM34P42696 430 aaKnown RBP3.43□□□□□ -1.86
VPS13A-212ENST00000493341 NCBP2P52298 156 aaKnown RBP eCLIP3.43□□□□□ -1.86
VPS13A-212ENST00000493341 OR2B6P58173 313 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 TIMM10P62072 90 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 PMS2P3Q13401 168 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 MAD2L1BPQ15013 274 aaPredicted RBP3.43□□□□□ -1.86
VPS13A-212ENST00000493341 TAL2Q16559 108 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 GUCA2BQ16661 112 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 GCSAMLQ5JQS6 135 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 C17orf78Q8N4C9 275 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 CYB561A3Q8NBI2 242 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 CHST4Q8NCG5 386 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 OR51G1Q8NGK1 321 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 OR6Q1Q8NGQ2 317 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 OR6K2Q8NGY2 324 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 GTF2H4Q92759 462 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 AURKBQ96GD4 344 aaPredicted RBP3.43□□□□□ -1.86
VPS13A-212ENST00000493341 ARL5BQ96KC2 179 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 B3GALT6Q96L58 329 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 REEP1Q9H902 201 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 NECAP2Q9NVZ3 263 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 HYOU1Q9Y4L1 999 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 KCNE3Q9Y6H6 103 aa3.43□□□□□ -1.86
VPS13A-212ENST00000493341 EPRSP07814 1512 aaKnown RBP3.42□□□□□ -1.86
VPS13A-212ENST00000493341 SBNO1A3KN83 1393 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 SUPT7LO94864 414 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 CDK14O94921 469 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 LCA5LO95447 670 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 KLF8O95600 359 aaPredicted RBP3.42□□□□□ -1.86
VPS13A-212ENST00000493341 P0C879 139 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 PGA4P0DJD7 388 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 PGA3P0DJD8 388 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 GABRR1P24046 479 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 RANBP1P43487 201 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 VSX2P58304 361 aaPredicted RBP3.42□□□□□ -1.86
VPS13A-212ENST00000493341 TAS2R60P59551 318 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 RPL31P62899 125 aaKnown RBP3.42□□□□□ -1.86
VPS13A-212ENST00000493341 RFX4Q33E94 735 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 C6orf89Q6UWU4 347 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 TEX43Q6ZNM6 134 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 ABHD12BQ7Z5M8 362 aaPredicted RBP3.42□□□□□ -1.86
VPS13A-212ENST00000493341 SETD3Q86TU7 594 aaPredicted RBP3.42□□□□□ -1.86
VPS13A-212ENST00000493341 CEND1Q8N111 149 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.42□□□□□ -1.86
VPS13A-212ENST00000493341 NEIL3Q8TAT5 605 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 SGTBQ96EQ0 304 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 CATSPER2Q96P56 530 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 ATOH8Q96SQ7 321 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 MED10Q9BTT4 135 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 TSSC4Q9Y5U2 329 aaPredicted RBP3.42□□□□□ -1.86
VPS13A-212ENST00000493341 F11RQ9Y624 299 aaKnown RBP3.42□□□□□ -1.86
VPS13A-212ENST00000493341 RAPGEF6Q8TEU7 1601 aa3.42□□□□□ -1.86
VPS13A-212ENST00000493341 KDM6BO15054 1643 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 ABCA9Q8IUA7 1624 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 H7C2Y5 167 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 FAM189A1O60320 539 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 SLC16A7O60669 478 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 MMP23AO75900 390 aa3.41□□□□□ -1.86
VPS13A-212ENST00000493341 GIG44P09565 113 aaPredicted RBP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms