RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 SLC25A2Q9BXI2 301 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 ULBP2Q9BZM5 246 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 SYNDIG1Q9H7V2 258 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 C12orf10Q9HB07 376 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 PRSS16Q9NQE7 514 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 SAMSN1Q9NSI8 373 aaKnown RBP1.33□□□□□ -2.2
CPSF3-205ENST00000489629 C20orf96Q9NUD7 363 aaPredicted RBP1.33□□□□□ -2.2
CPSF3-205ENST00000489629 CCDC59Q9P031 241 aaKnown RBP1.33□□□□□ -2.2
CPSF3-205ENST00000489629 CLN8Q9UBY8 286 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 RCL1Q9Y2P8 373 aaKnown RBP1.33□□□□□ -2.2
CPSF3-205ENST00000489629 SCN1AP35498 2009 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 IGSF9BQ9UPX0 1349 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 SCN4AP35499 1836 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 ANKRD12Q6UB98 2062 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 ADAMTS13Q76LX8 1427 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 PLA2R1Q13018 1463 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 IGLV1-50A0A075B6I6 118 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 GABRR3A8MPY1 467 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 LYRM9A8MSI8 78 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 SMKR1H3BMG3 65 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 H7C1H1 209 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 FKBP6O75344 327 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 AQP8O94778 261 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 SLC25A14O95258 325 aaPredicted RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 IGKV1D-16P01601 117 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 IFNW1P05000 195 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 UBTFL6P0CB48 400 aaPredicted RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 UBCP0CG48 685 aaKnown RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 MYL2P10916 166 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 PSMC3P17980 439 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 GABRG2P18507 467 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 CEACAM3P40198 252 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 MRPL19P49406 292 aaKnown RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 STXBP1P61764 594 aaKnown RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 ARG2P78540 354 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 PRR3P79522 188 aaKnown RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 MEF2BQ02080 365 aaPredicted RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 DOC2AQ14183 400 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 TRAM2Q15035 370 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 RGNQ15493 299 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 STK11Q15831 433 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 HADHQ16836 314 aaKnown RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 KRTAP6-3Q3LI67 103 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 CAVIN4Q5BKX8 364 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 THEM4Q5T1C6 240 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 TTC19Q6DKK2 380 aaPredicted RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 PLET1Q6UQ28 207 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 TMEM205Q6UW68 189 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 C12orf54Q6X4T0 127 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 CMC1Q7Z7K0 106 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 WDR86Q86TI4 376 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 C8orf31Q8N9H6 132 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 OR10AD1Q8NGE0 317 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 OR5AR1Q8NGP9 310 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 GPX8Q8TED1 209 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 GLYATL2Q8WU03 294 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 TM4SF18Q96CE8 201 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 DYNLL2Q96FJ2 89 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 DNAJC1Q96KC8 554 aaKnown RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF317Q96PQ6 595 aaPredicted RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 XPO6Q96QU8 1125 aaKnown RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 MICU1Q9BPX6 476 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 NDFIP1Q9BT67 221 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 TMEM38AQ9H6F2 299 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 TMEM9BQ9NQ34 198 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 PXMP2Q9NR77 195 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 SIRT7Q9NRC8 400 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 MYEF2Q9P2K5 600 aaKnown RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 GGA2Q9UJY4 613 aa1.32□□□□□ -2.2
CPSF3-205ENST00000489629 CHTOPQ9Y3Y2 248 aaKnown RBP1.32□□□□□ -2.2
CPSF3-205ENST00000489629 HMCN1Q96RW7 5635 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 AK9Q5TCS8 1911 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 A0A0U1RQV1 116 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 A0A1W2PP18 115 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF705GA8MUZ8 300 aaPredicted RBP1.31□□□□□ -2.2
CPSF3-205ENST00000489629 L7N2F9 121 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 GABRPO00591 440 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 BCKDKO14874 412 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 GCM2O75603 506 aaPredicted RBP1.31□□□□□ -2.2
CPSF3-205ENST00000489629 CCNB2O95067 398 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 ARG1P05089 322 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 EIF4EP06730 217 aaKnown RBP1.31□□□□□ -2.2
CPSF3-205ENST00000489629 CLTAP09496 248 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 CD3GP09693 182 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 POLR2MP0CAP2 368 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 RALBP11234 206 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 ATF6P18850 670 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 GGT1P19440 569 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 SRMP19623 302 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 CPN2P22792 545 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 WARSP23381 471 aaKnown RBP1.31□□□□□ -2.2
CPSF3-205ENST00000489629 BMI1P35226 326 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 CFHR2P36980 270 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 CCT6AP40227 531 aaKnown RBP1.31□□□□□ -2.2
CPSF3-205ENST00000489629 MAGEA1P43355 309 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 SERPINB8P50452 374 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 DAOAP59103 153 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 ATP6V0D1P61421 351 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 RAB11AP62491 216 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 LOXL1Q08397 574 aaPredicted RBP1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms