RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 DCTN6O00399 190 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 NME4O00746 187 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 SASH3O75995 380 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 FSTL3O95633 263 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 SELEP16581 610 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 PMELP40967 661 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 SLC7A2P52569 658 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 PRSS12P56730 875 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 HIST1H3AP68431 136 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 HIST2H3PS2Q5TEC6 136 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 C8orf82Q6P1X6 216 aaPredicted RBP10.35□□□□□ -0.75
CPSF3-204ENST00000489403 C16orf87Q6PH81 154 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 CORO6Q6QEF8 472 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 HIST2H3AQ71DI3 136 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.35□□□□□ -0.75
CPSF3-204ENST00000489403 CYP4Z1Q86W10 505 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 OR8B3Q8NGG8 313 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 RSRC1Q96IZ7 334 aaKnown RBP10.35□□□□□ -0.75
CPSF3-204ENST00000489403 PLEKHA8Q96JA3 519 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 OR8B2Q96RD0 313 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 COQ7Q99807 217 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 HDHD2Q9H0R4 259 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 SLITRK2Q9H156 845 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 RPS6KA6Q9UK32 745 aa10.35□□□□□ -0.75
CPSF3-204ENST00000489403 PKD1L1Q8TDX9 2849 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 KIR2DS1A0A191URI9 304 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 A0A1B0GWJ7 208 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 A0A1W2PRQ8 180 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 GSTA4O15217 222 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 SLC22A2O15244 555 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 TXNDC12O95881 172 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 HLA-DPB1P04440 258 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 H1F0P07305 194 aaKnown RBP10.34□□□□□ -0.75
CPSF3-204ENST00000489403 NCK1P16333 377 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 OMGP23515 440 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 FPR3P25089 353 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 PITPNBP48739 271 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 GSK3BP49841 420 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 RPS6KA3P51812 740 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 DBPQ10586 325 aaPredicted RBP10.34□□□□□ -0.75
CPSF3-204ENST00000489403 MAB21L1Q13394 359 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 DGCR6Q14129 220 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 RSPO1Q2MKA7 263 aaPredicted RBP10.34□□□□□ -0.75
CPSF3-204ENST00000489403 DEFB112Q30KQ8 113 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 KRTAP27-1Q3LI81 207 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 FGD3Q5JSP0 725 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 PGM2L1Q6PCE3 622 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 LYPD2Q6UXB3 125 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 BRD3OSQ6XYD6 125 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 DPY19L2P2Q6ZN68 376 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 COLCA1Q6ZS62 124 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 SPATC1Q76KD6 591 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 NLRC3Q7RTR2 1065 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 C1orf87Q8N0U7 546 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 GJC3Q8NFK1 279 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 RP9Q8TA86 221 aaKnown RBP10.34□□□□□ -0.75
CPSF3-204ENST00000489403 FAM162AQ96A26 154 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 TMIGD2Q96BF3 282 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 NUDT16L1Q9BRJ7 211 aaKnown RBP10.34□□□□□ -0.75
CPSF3-204ENST00000489403 TMEM100Q9NV29 134 aa10.34□□□□□ -0.75
CPSF3-204ENST00000489403 IGLV1-36A0A0B4J1U3 117 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 TRBV4-1A0A0J9YWV2 114 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 LRRC30A6NM36 301 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 HOXA3O43365 443 aaPredicted RBP10.33□□□□□ -0.76
CPSF3-204ENST00000489403 PPP1R3DO95685 299 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 ACSM4P0C7M7 580 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 H2AFXP16104 143 aaPredicted RBP10.33□□□□□ -0.76
CPSF3-204ENST00000489403 CRABP1P29762 137 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 GATA4P43694 442 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 CENPAP49450 140 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 FGF12P61328 243 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 HOXA4Q00056 320 aaPredicted RBP10.33□□□□□ -0.76
CPSF3-204ENST00000489403 DEFA6Q01524 100 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 COX10Q12887 443 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 SEC23BQ15437 767 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 PDLIM3Q53GG5 364 aaPredicted RBP10.33□□□□□ -0.76
CPSF3-204ENST00000489403 WDR25Q64LD2 544 aaPredicted RBP10.33□□□□□ -0.76
CPSF3-204ENST00000489403 DNM1P34Q6PK57 102 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 ZNF841Q6ZN19 808 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 CFAP77Q6ZQR2 320 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 FITM2Q8N6M3 262 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 C19orf18Q8NEA5 215 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 OR10S1Q8NGN2 331 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 HOPXQ9BPY8 73 aaPredicted RBP10.33□□□□□ -0.76
CPSF3-204ENST00000489403 CDADC1Q9BWV3 514 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 HCAR1Q9BXC0 346 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 PRDM13Q9H4Q3 707 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 NDUFAF4Q9P032 175 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 CLN8Q9UBY8 286 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 B9D1Q9UPM9 204 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 AURKCQ9UQB9 309 aa10.33□□□□□ -0.76
CPSF3-204ENST00000489403 UNC119BA6NIH7 251 aa10.32□□□□□ -0.76
CPSF3-204ENST00000489403 C22orf46C9J442 243 aa10.32□□□□□ -0.76
CPSF3-204ENST00000489403 PHYHO14832 338 aa10.32□□□□□ -0.76
CPSF3-204ENST00000489403 FAM20BO75063 409 aa10.32□□□□□ -0.76
CPSF3-204ENST00000489403 DIRAS1O95057 198 aa10.32□□□□□ -0.76
CPSF3-204ENST00000489403 COX4I1P13073 169 aa10.32□□□□□ -0.76
CPSF3-204ENST00000489403 IRF2P14316 349 aa10.32□□□□□ -0.76
CPSF3-204ENST00000489403 RHCEP18577 417 aa10.32□□□□□ -0.76
CPSF3-204ENST00000489403 MDH1P40925 334 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 304.9 ms