RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 LRRC30A6NM36 301 aa12.67□□□□□ -0.38
MCF2L-228ENST00000487354 C3orf80F5H4A9 247 aa12.67□□□□□ -0.38
MCF2L-228ENST00000487354 RER1O15258 196 aa12.67□□□□□ -0.38
MCF2L-228ENST00000487354 MPPED2Q15777 294 aa12.67□□□□□ -0.38
MCF2L-228ENST00000487354 RSPO1Q2MKA7 263 aaPredicted RBP12.67□□□□□ -0.38
MCF2L-228ENST00000487354 KRTAP27-1Q3LI81 207 aa12.67□□□□□ -0.38
MCF2L-228ENST00000487354 TTMPQ5BVD1 217 aa12.67□□□□□ -0.38
MCF2L-228ENST00000487354 PRAMEF6Q5VXH4 476 aa12.67□□□□□ -0.38
MCF2L-228ENST00000487354 FAM122BQ7Z309 247 aa12.67□□□□□ -0.38
MCF2L-228ENST00000487354 C1orf87Q8N0U7 546 aa12.67□□□□□ -0.38
MCF2L-228ENST00000487354 FAM156AQ8NDB6 213 aa12.67□□□□□ -0.38
MCF2L-228ENST00000487354 OR51A7Q8NH64 312 aa12.67□□□□□ -0.38
MCF2L-228ENST00000487354 ZNF582Q96NG8 517 aaPredicted RBP12.67□□□□□ -0.38
MCF2L-228ENST00000487354 WDR76Q9H967 626 aa12.67□□□□□ -0.38
MCF2L-228ENST00000487354 ATPIF1Q9UII2 106 aa12.67□□□□□ -0.38
MCF2L-228ENST00000487354 NOTCH3Q9UM47 2321 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 TSPAN9O75954 239 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 CD200P41217 278 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 GUCA1AP43080 201 aaPredicted RBP12.66□□□□□ -0.38
MCF2L-228ENST00000487354 RGS6P49758 472 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 NPY4RP50391 375 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 HIST1H3AP68431 136 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 COX10Q12887 443 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 HIST2H3PS2Q5TEC6 136 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 COLCA1Q6ZS62 124 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 HIST2H3AQ71DI3 136 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 NRMQ8IXM6 262 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 CELF2-AS1Q8N7Q2 184 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 LHX4Q969G2 390 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 Q96M85 177 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 TECTBQ96PL2 329 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 TRIM15Q9C019 465 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 SEMA6AQ9H2E6 1030 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 NKIRAS1Q9NYS0 192 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 RAB21Q9UL25 225 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 NDUFAF1Q9Y375 327 aa12.66□□□□□ -0.38
MCF2L-228ENST00000487354 PRSS37A4D1T9 235 aa12.65□□□□□ -0.38
MCF2L-228ENST00000487354 FXYD1O00168 92 aa12.65□□□□□ -0.38
MCF2L-228ENST00000487354 CDC42EP2O14613 210 aa12.65□□□□□ -0.38
MCF2L-228ENST00000487354 PIN1P1O15428 100 aa12.65□□□□□ -0.38
MCF2L-228ENST00000487354 CSF1P09603 554 aa12.65□□□□□ -0.38
MCF2L-228ENST00000487354 ANOS1P23352 680 aa12.65□□□□□ -0.38
MCF2L-228ENST00000487354 LSM6P62312 80 aaKnown RBP12.65□□□□□ -0.38
MCF2L-228ENST00000487354 EGR3Q06889 387 aa12.65□□□□□ -0.38
MCF2L-228ENST00000487354 NFYCQ13952 458 aa12.65□□□□□ -0.38
MCF2L-228ENST00000487354 RABL3Q5HYI8 236 aa12.65□□□□□ -0.38
MCF2L-228ENST00000487354 APOBEC3DQ96AK3 386 aaPredicted RBP12.65□□□□□ -0.38
MCF2L-228ENST00000487354 PRRC1Q96M27 445 aa12.65□□□□□ -0.38
MCF2L-228ENST00000487354 ECSITQ9BQ95 431 aa12.65□□□□□ -0.38
MCF2L-228ENST00000487354 BAG5Q9UL15 447 aa12.65□□□□□ -0.38
MCF2L-228ENST00000487354 LHFPL6Q9Y693 200 aa12.65□□□□□ -0.38
MCF2L-228ENST00000487354 DNAH9Q9NYC9 4486 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 PTBP3O95758 552 aaKnown RBP12.64□□□□□ -0.39
MCF2L-228ENST00000487354 OPN1MWP04001 364 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 LIPFP07098 398 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 CD14P08571 375 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 VIMP08670 466 aaKnown RBP12.64□□□□□ -0.39
MCF2L-228ENST00000487354 OPN1MW2P0DN77 364 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 OPN1MW3P0DN78 364 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 FPR3P25089 353 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 PRKCDQ05655 676 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 KCNMB1Q16558 191 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 SFRP4Q6FHJ7 346 aaPredicted RBP12.64□□□□□ -0.39
MCF2L-228ENST00000487354 NANOGP8Q6NSW7 305 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 GDPGP1Q6ZNW5 385 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 CROCCP2Q86T23 111 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 PDZD9Q8IXQ8 264 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 FGFRL1Q8N441 504 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 RASSF4Q9H2L5 321 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 MMADHCQ9H3L0 296 aaPredicted RBP12.64□□□□□ -0.39
MCF2L-228ENST00000487354 UFSP2Q9NUQ7 469 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 TMEM100Q9NV29 134 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 ZNRD1Q9P1U0 126 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 COA3Q9Y2R0 106 aaPredicted RBP12.64□□□□□ -0.39
MCF2L-228ENST00000487354 SNX13Q9Y5W8 968 aa12.64□□□□□ -0.39
MCF2L-228ENST00000487354 ZNF816-ZNF321PA0A0X1KG74 233 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 HTR3EA5X5Y0 456 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 LGALS8O00214 317 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 FFAR1O14842 300 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 ANGPT2O15123 496 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 ARF6P62330 175 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 ST3GAL3Q11203 375 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 GK2Q14410 553 aaPredicted RBP12.63□□□□□ -0.39
MCF2L-228ENST00000487354 MEP1BQ16820 701 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 ANKDD1AQ495B1 522 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 METTL11BQ5VVY1 283 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 CD276Q5ZPR3 534 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 OAFQ86UD1 273 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 OFCC1Q8IZS5 231 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 OR5L1Q8NGL2 311 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 ERGIC1Q969X5 290 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 COQ7Q99807 217 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 SYT4Q9H2B2 425 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 KIF17Q9P2E2 1029 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 RHCGQ9UBD6 479 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 VPREB3Q9UKI3 123 aa12.63□□□□□ -0.39
MCF2L-228ENST00000487354 A0A1B0GW55 424 aa12.62□□□□□ -0.39
MCF2L-228ENST00000487354 EFCAB9A8MZ26 197 aa12.62□□□□□ -0.39
MCF2L-228ENST00000487354 J3KTA2 159 aa12.62□□□□□ -0.39
MCF2L-228ENST00000487354 AHCYL1O43865 530 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms