RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 WFDC1Q9HC57 220 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 LYRM4Q9HD34 91 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 ZNRD1Q9P1U0 126 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 MTFP1Q9UDX5 166 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 RCL1Q9Y2P8 373 aaKnown RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 CAB39Q9Y376 341 aaPredicted RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 TSSC4Q9Y5U2 329 aaPredicted RBP1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 TMEM14AQ9Y6G1 99 aa1.68□□□□□ -2.14
CCDC88A-212ENST00000474059 TTC41PQ6P2S7 1318 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 TNS2Q63HR2 1409 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 SLIT3O75094 1523 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 PIKFYVEQ9Y2I7 2098 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 A0A0U1RQV1 116 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 TMEM150BA6NC51 233 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 OR6C74A6NCV1 312 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 LRRIQ4A6NIV6 560 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 ZNF705GA8MUZ8 300 aaPredicted RBP1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 GOLGA8TH3BQL2 631 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 H7C0C1 242 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 H7C1H1 209 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 RAD51BO15315 384 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 NVLO15381 856 aaKnown RBP1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 FCN3O75636 299 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 YIF1AO95070 293 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 HLA-HP01893 362 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 HBE1P02100 147 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 ADRA2AP08913 450 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 RHOXF2BP0C7M4 288 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 CISD3P0C7P0 127 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 UBCP0CG48 685 aaKnown RBP1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 ERGP11308 486 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 DTYMKP23919 212 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 IL32P24001 234 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 TNFSF9P41273 254 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 CDKN2DP55273 166 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 DGCR6Q14129 220 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 ZNF266Q14584 549 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 CHRFAM7AQ494W8 412 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 ZNF684Q5T5D7 378 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 Q5W150 140 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 FBXW9Q5XUX1 488 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 FAM71AQ8IYT1 594 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 MICU2Q8IYU8 434 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 CBR4Q8N4T8 237 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 COX18Q8N8Q8 333 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 C8orf31Q8N9H6 132 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 SNX31Q8N9S9 440 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 OR11H7Q8NGC8 314 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 OR6Q1Q8NGQ2 317 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 OR8U1Q8NH10 309 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 COQ8AQ8NI60 647 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 SYNPRQ8TBG9 265 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 OR51E1Q8TCB6 317 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 RGP1Q92546 391 aaPredicted RBP1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 FRZBQ92765 325 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 NEURL3Q96EH8 262 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 RNF145Q96MT1 663 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 ZNF382Q96SR6 550 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 ANP32EQ9BTT0 268 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 PIGUQ9H490 435 aa1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 DDX19AQ9NUU7 478 aaKnown RBP1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 DDX18Q9NVP1 670 aaKnown RBP1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 ZNF282Q9UDV7 671 aaPredicted RBP1.67□□□□□ -2.14
CCDC88A-212ENST00000474059 FHOD3Q2V2M9 1422 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 IGKV1-8A0A0C4DH67 115 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 A0A0J9YXV3 536 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 TMEM223A0PJW6 202 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 A6NDN8 102 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 NCF1BA6NI72 391 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 NCF1CA8MVU1 366 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 SUPT3HB4E1H0 165 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 DNASE2O00115 360 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 BCKDKO14874 412 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 RBFOX2O43251 390 aaKnown RBP eCLIP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 ZNF207O43670 478 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 VAMP5O95183 116 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 HPRT1P00492 218 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 OXTP01178 125 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 APCSP02743 223 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 IFNW1P05000 195 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 OR56A5P0C7T3 313 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 USF1P22415 310 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 RFC3P40938 356 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 KIR3DL2P43630 455 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 SERPINB8P50452 374 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 SYNJ2BPP57105 145 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 ZNF121P58317 390 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 RPS15AP62244 130 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 KIR2DS1Q14954 304 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 TRMT5Q32P41 509 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 SMUG1Q53HV7 270 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 C5orf47Q569G3 176 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 BEX5Q5H9J7 111 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 GCSAMLQ5JQS6 135 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 AVPI1Q5T686 147 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 IGFL1Q6UW32 110 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 LRP11Q86VZ4 500 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 CALHM1Q8IU99 346 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 CDKL3Q8IVW4 592 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 UBALD2Q8IYN6 164 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms