RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 C1orf229Q6ZS94 237 aaPredicted RBP13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 ZNF283Q8N7M2 679 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 BHLHE23Q8NDY6 225 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 OR2AJ1Q8NGZ0 328 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 TMPRSS13Q9BYE2 586 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 PLA2G12AQ9BZM1 189 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 PCDHB10Q9UN67 800 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 PPP1R3CQ9UQK1 317 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 TENM1Q9UKZ4 2725 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 TCRBV5S2A0A599 114 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 CCNB2O95067 398 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 ADRA2CP18825 462 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 GGT2P36268 569 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 PRSS12P56730 875 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 SCGB2A2Q13296 93 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 RSPO1Q2MKA7 263 aaPredicted RBP13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 RPL13AP3Q6NVV1 102 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 AQP11Q8NBQ7 271 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 PROKR2Q8NFJ6 384 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 OR8G5Q8NG78 346 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 OR4C15Q8NGM1 316 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 OR8D4Q8NGM9 314 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 ZNF582Q96NG8 517 aaPredicted RBP13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 ATF6BQ99941 703 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 TRIM15Q9C019 465 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 TBC1D23Q9NUY8 699 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 MRPL22Q9NWU5 206 aaKnown RBP13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 CYB5R1Q9UHQ9 305 aa13.25□□□□□ -0.29
CCDC88B-205ENST00000472524 IGHV3-64DA0A0J9YX35 117 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 TVP23AA6NH52 213 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 H0YL77 283 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 J3QLI3 93 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 BHLHE40O14503 412 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 GASTP01350 101 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 ACSM4P0C7M7 580 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 ZNF823P16415 610 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 EPHA1P21709 976 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 RPS27P42677 84 aaKnown RBP13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 MAGEA2P43356 314 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 MMP16P51512 607 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 HMGA2P52926 109 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 BTG1P62324 171 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 TRAP1Q12931 704 aaKnown RBP13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 LCN8Q6JVE9 175 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 LYPD4Q6UWN0 246 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 DHFR2Q86XF0 187 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 ARHGAP24Q8N264 748 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 LINC00471Q8N535 108 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 SPICQ8N5J4 248 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 TEX29Q8N6K0 151 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 OR51L1Q8NGJ5 315 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 OR9Q1Q8NGQ5 310 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 OR13G1Q8NGZ3 307 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 ZNF420Q8TAQ5 688 aaPredicted RBP13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 MEGF10Q96KG7 1140 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 SIGLEC11Q96RL6 698 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 HCAR1Q9BXC0 346 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 C1QTNF5Q9BXJ0 243 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 MUC13Q9H3R2 512 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 MAGIXQ9H6Y5 334 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 PNRC2Q9NPJ4 139 aaKnown RBP13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 VNN3Q9NY84 501 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 U3KQV3 271 aa13.24□□□□□ -0.29
CCDC88B-205ENST00000472524 A0A0A6YYJ9 748 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 IQCF6A8MYZ5 107 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 FOXH1O75593 365 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 SOX14O95416 240 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 LCATP04180 440 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 CALB2P22676 271 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 ZFP36P26651 326 aaKnown RBP13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 MS4A2Q01362 244 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 ECH1Q13011 328 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 TRIM25Q14258 630 aaKnown RBP13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 ZMYND11Q15326 602 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 KRTAP27-1Q3LI81 207 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 OR2T5Q6IEZ7 315 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 ZNF770Q6IQ21 691 aaPredicted RBP13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 SLC27A4Q6P1M0 643 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 COLCA1Q6ZS62 124 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 RASSF6Q6ZTQ3 369 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 C1QL2Q7Z5L3 287 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 NAA40Q86UY6 237 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 KLHL36Q8N4N3 616 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 SLC37A3Q8NCC5 494 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 CCDC197Q8NCU1 140 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 OR2T4Q8NH00 348 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 OR2T29Q8NH02 315 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 ZNF418Q8TF45 676 aaPredicted RBP13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 ZNRF4Q8WWF5 429 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 CCDC124Q96CT7 223 aaKnown RBP13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 MAP6Q96JE9 813 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 SLC30A2Q9BRI3 323 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 TSSK6Q9BXA6 273 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 C7orf69Q9H7B7 122 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 REEP1Q9H902 201 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 PATZ1Q9HBE1 687 aaKnown RBP13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 GCM1Q9NP62 436 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 IL20Q9NYY1 176 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 KCNG2Q9UJ96 466 aa13.23□□□□□ -0.29
CCDC88B-205ENST00000472524 SAMHD1Q9Y3Z3 626 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms