RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 WDR76Q9H967 626 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 FLNBO75369 2602 aaKnown RBP8.59□□□□□ -1.03
HDAC3-205ENST00000469550 SDK2Q58EX2 2172 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 TRBV6-7A0A0A0MS04 114 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 FAM25EA8MYX2 175 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 ZNF736B4DX44 427 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-205ENST00000469550 H0YC42 278 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 EIF1AYO14602 144 aaKnown RBP8.59□□□□□ -1.03
HDAC3-205ENST00000469550 FGF17O60258 216 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 TPT1P13693 172 aaKnown RBP8.59□□□□□ -1.03
HDAC3-205ENST00000469550 ABOP16442 354 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 PAX6P26367 422 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 GRPRP30550 384 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 PPICP45877 212 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 EIF1AXP47813 144 aaKnown RBP8.59□□□□□ -1.03
HDAC3-205ENST00000469550 PRKXP51817 358 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 SNRPNP63162 240 aaKnown RBP8.59□□□□□ -1.03
HDAC3-205ENST00000469550 EXOSC7Q15024 291 aaKnown RBP8.59□□□□□ -1.03
HDAC3-205ENST00000469550 TCEA2Q15560 299 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 RAB12Q6IQ22 244 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 H3F3CQ6NXT2 135 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 DRAM2Q6UX65 266 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 CBLN2Q8IUK8 224 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 ZDHHC22Q8N966 263 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 OR13C8Q8NGS7 320 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 CCL4L1Q8NHW4 92 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 PTX4Q96A99 478 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 RNF122Q9H9V4 155 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 MMP26Q9NRE1 261 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 ASF1BQ9NVP2 202 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 FOXJ2Q9P0K8 574 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 LAMP5Q9UJQ1 280 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 NOP16Q9Y3C1 178 aaKnown RBP8.59□□□□□ -1.03
HDAC3-205ENST00000469550 TEX13DA0A0J9YY54 714 aaPredicted RBP8.58□□□□□ -1.04
HDAC3-205ENST00000469550 MEIS3P1A6NDR6 274 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 OR2AT4A6NND4 320 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 CYR61O00622 381 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 TERTO14746 1132 aaKnown RBP8.58□□□□□ -1.04
HDAC3-205ENST00000469550 ACTL6AO96019 429 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 CYB5AP00167 134 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 HLA-AP01891 365 aaKnown RBP8.58□□□□□ -1.04
HDAC3-205ENST00000469550 S100A8P05109 93 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 CRYBA1P05813 215 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 CT62P0C5K7 136 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 SMIM6P0DI80 62 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 TACR3P29371 465 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 SDHAP31040 664 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 ATP1B3P54709 279 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 PSG6Q00889 435 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 ID2Q02363 134 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 SRSF6Q13247 344 aaKnown RBP8.58□□□□□ -1.04
HDAC3-205ENST00000469550 PHF19Q5T6S3 580 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 TMEM164Q5U3C3 297 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 PRSS35Q8N3Z0 413 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 GALNT16Q8N428 558 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 BPIFB2Q8N4F0 458 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 LINC00469Q8N7U9 141 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 ZNF614Q8N883 585 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 ZSCAN1Q8NBB4 408 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 OR10AC1Q8NH08 325 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 LCN9Q8WX39 176 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 ARSGQ96EG1 525 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 SLC41A2Q96JW4 573 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 TAAR9Q96RI9 348 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 ZNF587Q96SQ5 575 aaPredicted RBP8.58□□□□□ -1.04
HDAC3-205ENST00000469550 PRRT1Q99946 306 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 DDA1Q9BW61 102 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 TINAGL1Q9GZM7 467 aaPredicted RBP8.58□□□□□ -1.04
HDAC3-205ENST00000469550 TLNRD1Q9H1K6 362 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 MYEF2Q9P2K5 600 aaKnown RBP8.58□□□□□ -1.04
HDAC3-205ENST00000469550 IKZF2Q9UKS7 526 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 NUP210LQ5VU65 1888 aa8.58□□□□□ -1.04
HDAC3-205ENST00000469550 MEX3AA1L020 520 aaKnown RBP8.57□□□□□ -1.04
HDAC3-205ENST00000469550 RHPN2P1A8MT19 583 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 FAM171A2A8MVW0 826 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 SLC35E2P0CK97 266 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 SPP1P10451 314 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 CD1CP29017 333 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 KIR3DL2P43630 455 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 CAPZA1P52907 286 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 PNLIPRP2P54317 469 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 POLR2GP62487 172 aaKnown RBP eCLIP8.57□□□□□ -1.04
HDAC3-205ENST00000469550 PJVKQ0ZLH3 352 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 KIR2DS3Q14952 304 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 ZNHIT3Q15649 155 aaPredicted RBP8.57□□□□□ -1.04
HDAC3-205ENST00000469550 TBR1Q16650 682 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 SWI5Q1ZZU3 235 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 NKAPLQ5M9Q1 402 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 TMEM71Q6P5X7 295 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 ZNF574Q6ZN55 896 aaPredicted RBP8.57□□□□□ -1.04
HDAC3-205ENST00000469550 NUP54Q7Z3B4 507 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 BAP18Q8IXM2 172 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 ZNF440Q8IYI8 595 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 RCBTB1Q8NDN9 531 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 OR52R1Q8NGF1 315 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 OR51A4Q8NGJ6 313 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 FLVCR1-AS1Q8TAF5 88 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 ZCCHC10Q8TBK6 192 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 ELP5Q8TE02 316 aa8.57□□□□□ -1.04
HDAC3-205ENST00000469550 RSC1A1Q92681 617 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms