RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 SLC36A3Q495N2 470 aa12.9□□□□□ -0.34
SKA3-204ENST00000462482 OTPQ5XKR4 325 aa12.9□□□□□ -0.34
SKA3-204ENST00000462482 BHLHE23Q8NDY6 225 aa12.9□□□□□ -0.34
SKA3-204ENST00000462482 OR2AJ1Q8NGZ0 328 aa12.9□□□□□ -0.34
SKA3-204ENST00000462482 CDADC1Q9BWV3 514 aa12.9□□□□□ -0.34
SKA3-204ENST00000462482 CLN8Q9UBY8 286 aa12.9□□□□□ -0.34
SKA3-204ENST00000462482 NOP16Q9Y3C1 178 aaKnown RBP12.9□□□□□ -0.34
SKA3-204ENST00000462482 IQCF6A8MYZ5 107 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 F5H5P2 479 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 NME4O00746 187 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 FSTL3O95633 263 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 IGHV4-38-2P0DP08 117 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 ZNF26P17031 533 aaPredicted RBP12.89□□□□□ -0.35
SKA3-204ENST00000462482 RHCEP18577 417 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 RBMXP38159 391 aaKnown RBP12.89□□□□□ -0.35
SKA3-204ENST00000462482 RAD23AP54725 363 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 SMIM11AP58511 58 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 SLC9A3R2Q15599 337 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 TUSC1Q2TAM9 212 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 SMARCD3Q6STE5 483 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 C9orf139Q6ZV77 190 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 ERGIC1Q969X5 290 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 UPRTQ96BW1 309 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 ZNF48Q96MX3 618 aaPredicted RBP12.89□□□□□ -0.35
SKA3-204ENST00000462482 ERMAPQ96PL5 475 aaPredicted RBP12.89□□□□□ -0.35
SKA3-204ENST00000462482 PITX2Q99697 317 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 SLC30A2Q9BRI3 323 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 NUDT16L1Q9BRJ7 211 aaKnown RBP12.89□□□□□ -0.35
SKA3-204ENST00000462482 TMEM246Q9BRR3 403 aa12.89□□□□□ -0.35
SKA3-204ENST00000462482 GMPR2Q9P2T1 348 aaKnown RBP12.89□□□□□ -0.35
SKA3-204ENST00000462482 SAMD4AQ9UPU9 718 aaKnown RBP12.89□□□□□ -0.35
SKA3-204ENST00000462482 TRAV40A0A0B4J280 105 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 IGHV3-64DA0A0J9YX35 117 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 KIR2DS1A0A191URI9 304 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 TXNDC12O95881 172 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 CRYBA1P05813 215 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 NOS3P29474 1203 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 SLC6A6P31641 620 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 NUDT2P50583 147 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 BPIFB3P59826 476 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 KCNJ8Q15842 424 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 ZNF404Q494X3 552 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 GPR157Q5UAW9 335 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 CGB2Q6NT52 195 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 LEG1Q6P5S2 330 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 C16orf87Q6PH81 154 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 PTCHD4Q6ZW05 846 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 SPATC1Q76KD6 591 aa12.88□□□□□ -0.35
SKA3-204ENST00000462482 SPRYD4Q8WW59 207 aaPredicted RBP12.88□□□□□ -0.35
SKA3-204ENST00000462482 SRA1Q9HD15 236 aaKnown RBP12.88□□□□□ -0.35
SKA3-204ENST00000462482 F5H5K5 113 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 H0YL77 283 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 IMPA2O14732 288 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 PHYHO14832 338 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 PPP1R3DO95685 299 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 HLA-DQA2P01906 255 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 LCATP04180 440 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 H2AFXP16104 143 aaPredicted RBP12.87□□□□□ -0.35
SKA3-204ENST00000462482 NCK1P16333 377 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 CDKN2AP42771 156 aaKnown RBP12.87□□□□□ -0.35
SKA3-204ENST00000462482 OMPP47874 163 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 HIST1H3AP68431 136 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 COX10Q12887 443 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 MEP1BQ16820 701 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 HIST2H3PS2Q5TEC6 136 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 CORO6Q6QEF8 472 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 TREML4Q6UXN2 200 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 HACD2Q6Y1H2 254 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 DCDC5Q6ZRR9 648 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 HIST2H3AQ71DI3 136 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 PGAP1Q75T13 922 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 CELF2-AS1Q8N7Q2 184 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 OR52J3Q8NH60 311 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 FANK1Q8TC84 345 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 C1orf147Q96MC9 270 aaPredicted RBP12.87□□□□□ -0.35
SKA3-204ENST00000462482 TSSK2Q96PF2 358 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 SLC22A4Q9H015 551 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 SLITRK2Q9H156 845 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 WDR76Q9H967 626 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 NDUFAF4Q9P032 175 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 B9D1Q9UPM9 204 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 LHFPL6Q9Y693 200 aa12.87□□□□□ -0.35
SKA3-204ENST00000462482 MGAM2Q2M2H8 2515 aa12.86□□□□□ -0.35
SKA3-204ENST00000462482 TRBV4-1A0A0J9YWV2 114 aa12.86□□□□□ -0.35
SKA3-204ENST00000462482 A0A1B0GUS0 222 aa12.86□□□□□ -0.35
SKA3-204ENST00000462482 MLNRO43193 412 aa12.86□□□□□ -0.35
SKA3-204ENST00000462482 ENSAO43768 121 aaKnown RBP12.86□□□□□ -0.35
SKA3-204ENST00000462482 PLATP00750 562 aa12.86□□□□□ -0.35
SKA3-204ENST00000462482 HLA-DPB1P04440 258 aa12.86□□□□□ -0.35
SKA3-204ENST00000462482 IFNGR2P38484 337 aa12.86□□□□□ -0.35
SKA3-204ENST00000462482 MDH1P40925 334 aaKnown RBP12.86□□□□□ -0.35
SKA3-204ENST00000462482 GATA4P43694 442 aa12.86□□□□□ -0.35
SKA3-204ENST00000462482 TPTEP56180 551 aa12.86□□□□□ -0.35
SKA3-204ENST00000462482 PAX2Q02962 417 aa12.86□□□□□ -0.35
SKA3-204ENST00000462482 RFX4Q33E94 735 aa12.86□□□□□ -0.35
SKA3-204ENST00000462482 ZNF362Q5T0B9 420 aaPredicted RBP12.86□□□□□ -0.35
SKA3-204ENST00000462482 CD276Q5ZPR3 534 aa12.86□□□□□ -0.35
SKA3-204ENST00000462482 GLYATQ6IB77 296 aa12.86□□□□□ -0.35
SKA3-204ENST00000462482 MRPL21Q7Z2W9 205 aaKnown RBP12.86□□□□□ -0.35
SKA3-204ENST00000462482 OR10S1Q8NGN2 331 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms