RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 SLC30A2Q9BRI3 323 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 TMEM246Q9BRR3 403 aa13.47□□□□□ -0.25
COL7A1-204ENST00000462475 UNKLQ9H9P5 680 aaKnown RBP13.47□□□□□ -0.25
COL7A1-204ENST00000462475 TRBV4-1A0A0J9YWV2 114 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 MDFIC2A0A1B0GVS7 189 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 IQCF6A8MYZ5 107 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 CLDN34H7C241 214 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 IFNL4K9M1U5 179 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 TXNDC12O95881 172 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 PMELP40967 661 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 CENPAP49450 140 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 SRP9P49458 86 aaKnown RBP13.46□□□□□ -0.25
COL7A1-204ENST00000462475 GNB2P62879 340 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 CORO6Q6QEF8 472 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 BTNL3Q6UXE8 466 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 C9orf139Q6ZV77 190 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 SLC25A28Q96A46 364 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 UPRTQ96BW1 309 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 HDHD2Q9H0R4 259 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 NDUFAF4Q9P032 175 aa13.46□□□□□ -0.25
COL7A1-204ENST00000462475 IGLV1-36A0A0B4J1U3 117 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 UNC119BA6NIH7 251 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 DIRAS1O95057 198 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 PPP1R3DO95685 299 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 PLATP00750 562 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 HLA-DPB1P04440 258 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 PPIAL4GP0DN37 164 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 RSPO1Q2MKA7 263 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-204ENST00000462475 ZNF404Q494X3 552 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 LEG1Q6P5S2 330 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 LRRN1Q6UXK5 716 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 DPY19L2P2Q6ZN68 376 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 GJC3Q8NFK1 279 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 RAB40AQ8WXH6 277 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 NEIL1Q96FI4 390 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-204ENST00000462475 HOPXQ9BPY8 73 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-204ENST00000462475 KCTD14Q9BQ13 255 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-204ENST00000462475 MIOXQ9UGB7 285 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 RPS6KA6Q9UK32 745 aa13.45□□□□□ -0.26
COL7A1-204ENST00000462475 A0A1B0GWJ7 208 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 RHCEP18577 417 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 CPT2P23786 658 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 MTNR1AP48039 350 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 PITPNBP48739 271 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 NUDT2P50583 147 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 RPS6KA3P51812 740 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 IL13RA1P78552 427 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 COX10Q12887 443 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 ZNF181Q2M3W8 571 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 KRTAP27-1Q3LI81 207 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 PGM2L1Q6PCE3 622 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 DNM1P34Q6PK57 102 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 CFAP77Q6ZQR2 320 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 COLCA1Q6ZS62 124 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 LINC00346Q8IVM7 164 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 FAM86B1Q8N7N1 296 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 OR8B3Q8NGG8 313 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 OR52J3Q8NH60 311 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 FANK1Q8TC84 345 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 PLEKHA8Q96JA3 519 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 C7orf34Q96L11 122 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 OR8B2Q96RD0 313 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 FUZQ9BT04 418 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 AURKCQ9UQB9 309 aa13.44□□□□□ -0.26
COL7A1-204ENST00000462475 FAM32AQ9Y421 112 aaKnown RBP13.44□□□□□ -0.26
COL7A1-204ENST00000462475 LRRC30A6NM36 301 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 FSTL3O95633 263 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 MDKP21741 143 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-204ENST00000462475 FPR3P25089 353 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 CRABP1P29762 137 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 HOXA4Q00056 320 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-204ENST00000462475 MAB21L1Q13394 359 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 SLC18B1Q6NT16 456 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 SMARCD3Q6STE5 483 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 LYPD2Q6UXB3 125 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 BRD3OSQ6XYD6 125 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 C1orf87Q8N0U7 546 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 OR6V1Q8N148 313 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 C19orf18Q8NEA5 215 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 SLC26A10Q8NG04 563 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 DHRS1Q96LJ7 313 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 ERMAPQ96PL5 475 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-204ENST00000462475 NMNAT3Q96T66 252 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 NUDT16L1Q9BRJ7 211 aaKnown RBP13.43□□□□□ -0.26
COL7A1-204ENST00000462475 CDADC1Q9BWV3 514 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 HCAR1Q9BXC0 346 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 TMEM100Q9NV29 134 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 ABCD2Q9UBJ2 740 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 B9D1Q9UPM9 204 aa13.43□□□□□ -0.26
COL7A1-204ENST00000462475 KIR2DS1A0A191URI9 304 aa13.42□□□□□ -0.26
COL7A1-204ENST00000462475 HOXA3O43365 443 aaPredicted RBP13.42□□□□□ -0.26
COL7A1-204ENST00000462475 ACSM4P0C7M7 580 aa13.42□□□□□ -0.26
COL7A1-204ENST00000462475 MDH1P40925 334 aaKnown RBP13.42□□□□□ -0.26
COL7A1-204ENST00000462475 GATA4P43694 442 aa13.42□□□□□ -0.26
COL7A1-204ENST00000462475 GK2Q14410 553 aaPredicted RBP13.42□□□□□ -0.26
COL7A1-204ENST00000462475 PRAMEF6Q5VXH4 476 aa13.42□□□□□ -0.26
COL7A1-204ENST00000462475 TREML4Q6UXN2 200 aa13.42□□□□□ -0.26
COL7A1-204ENST00000462475 HACD2Q6Y1H2 254 aa13.42□□□□□ -0.26
COL7A1-204ENST00000462475 SPATC1Q76KD6 591 aa13.42□□□□□ -0.26
COL7A1-204ENST00000462475 NLRC3Q7RTR2 1065 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms