RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TRAPPC4Q9Y296 219 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 ALG5Q9Y673 324 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 A3GALT2U3KPV4 340 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 TRABD2BA6NFA1 517 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 LIPT2A6NK58 231 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 OIP5O43482 229 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 CALCBP10092 127 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ERVK-16P61578 105 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF718Q3SXZ3 478 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ACTBL2Q562R1 376 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 OR2M7Q8NG81 312 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 OR10K1Q8NGX5 313 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 OR51F2Q8NH61 342 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 OR1F12Q8NHA8 337 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ZFAND1Q8TCF1 268 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 SCGB1C1Q8TD33 95 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 CACNA1IQ9P0X4 2223 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 SPTBN2O15020 2390 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 BORCS7-ASMTA0A0B4J1R7 106 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 FUOMA2VDF0 154 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 CHRM2P08172 466 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 LIFP15018 202 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 CTLA4P16410 223 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 TGFBR1P36897 503 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 FABP6P51161 128 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 TGIF1Q15583 401 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 GSG1Q2KHT4 349 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF610Q8N9Z0 462 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 OR51J1Q9H342 316 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ICAM5Q9UMF0 924 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 HS3ST3B1Q9Y662 390 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 GVINP1Q7Z2Y8 2422 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 RP2O75695 350 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 TIAF1O95411 115 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ACP1P24666 158 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 AGTR1P30556 359 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 HOXA6P31267 233 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ACAA2P42765 397 aaKnown RBP6.63□□□□□ -1.35
SYNE1-213ENST00000448038 AGFG1P52594 562 aaKnown RBP6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ZBTB8BQ8NAP8 495 aaPredicted RBP6.63□□□□□ -1.35
SYNE1-213ENST00000448038 OR51A2Q8NGJ7 313 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ORAI1Q96D31 301 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 YIPF6Q96EC8 236 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 BCO1Q9HAY6 547 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 RER1O15258 196 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 NKX2-8O15522 239 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 BMP5P22003 454 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF133P52736 654 aaPredicted RBP6.63□□□□□ -1.35
SYNE1-213ENST00000448038 EDDM3BP56851 147 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 C3AR1Q16581 482 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 PCK2Q16822 640 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 STAC2Q6ZMT1 411 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 LIN37Q96GY3 246 aaPredicted RBP6.63□□□□□ -1.35
SYNE1-213ENST00000448038 SPIN2AQ99865 258 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 SPIN2BQ9BPZ2 258 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 OCSTAMPQ9BR26 566 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 CHRNA10Q9GZZ6 450 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ARL6Q9H0F7 186 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ACKR4Q9NPB9 350 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 GNG12Q9UBI6 72 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 MTCL1Q9Y4B5 1905 aaKnown RBP6.63□□□□□ -1.35
SYNE1-213ENST00000448038 BHLHE40O14503 412 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 DEGS1O15121 323 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ACTL6AO96019 429 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 LPLP06858 475 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 SP1P08047 785 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 GAAP10253 952 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 CD96P40200 585 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF136P52737 540 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 OR10A3P58181 314 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 CYCSP99999 105 aaKnown RBP6.63□□□□□ -1.35
SYNE1-213ENST00000448038 PLGLAQ15195 96 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 PAN3Q58A45 887 aaKnown RBP6.63□□□□□ -1.35
SYNE1-213ENST00000448038 BEST4Q8NFU0 473 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 OR2T35Q8NGX2 323 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 BOD1Q96IK1 185 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ADGRL4Q9HBW9 690 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 ANKRD36A6QL64 1941 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 COL4A6Q14031 1691 aa6.63□□□□□ -1.35
SYNE1-213ENST00000448038 A0A0A6YYH2 397 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 HMX3A6NHT5 357 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 A6NJ64 397 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 E9PI62 339 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 AIPO00170 330 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 PRKACAP17612 351 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF528Q3MIS6 628 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 IDO2Q6ZQW0 420 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 LHFPL2Q6ZUX7 228 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 PRSS45Q7RTY3 260 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 EGFL6Q8IUX8 553 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 OR6X1Q8NH79 312 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 FNDC9Q8TBE3 224 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 APOBEC3DQ96AK3 386 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-213ENST00000448038 POLDIP2Q9Y2S7 368 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 SMCO3A2RU48 225 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 MEIOCA2RUB1 952 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 SULT1B1O43704 296 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 TSPAN2O60636 221 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 TFP02787 698 aa6.62□□□□□ -1.35
SYNE1-213ENST00000448038 LSM11P83369 360 aaKnown RBP eCLIP6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms