RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 H7C1C5 153 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 CSO75390 466 aaKnown RBP6.26□□□□□ -1.41
SCN1A-204ENST00000423058 OR2C1O95371 312 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 FAM157BP0CG42 384 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 GPR85P60893 370 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 H3F3AP84243 136 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 AQP6Q13520 282 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 MICBQ29980 383 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 ANKRD16Q6P6B7 361 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 TP53INP2Q8IXH6 220 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 RPEQ96AT9 228 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 OCIAD1Q9NX40 245 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 UGT2A1Q9Y4X1 527 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 PDCD11Q14690 1871 aaKnown RBP6.26□□□□□ -1.41
SCN1A-204ENST00000423058 TUBGCP6Q96RT7 1819 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 A0A1B0GWA3 101 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 AQP7P3A6NL99 342 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 ST8SIA3O43173 380 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 SULT1C4O75897 302 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 SLC25A6P12236 298 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 PSMB1P20618 241 aaKnown RBP6.26□□□□□ -1.41
SCN1A-204ENST00000423058 SLC19A1P41440 591 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 ILKQ13418 452 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 IL11RAQ14626 422 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 SPANXN5Q5MJ07 72 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 DGAT2L7PQ6IED9 249 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 DTWD2Q8NBA8 298 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 LAT2Q9GZY6 243 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 CSNK1G1Q9HCP0 422 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 OR6C68A6NDL8 312 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 ACOD1A6NK06 481 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 SIRPB1O00241 398 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 HOXC11O43248 304 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-204ENST00000423058 PAPLNO95428 1278 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 SCG5P05408 212 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 DUSP6Q16828 381 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 AGBL4Q5VU57 503 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 RSPO2Q6UXX9 243 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-204ENST00000423058 RBPMS2Q6ZRY4 209 aaKnown RBP6.26□□□□□ -1.41
SCN1A-204ENST00000423058 MUC15Q8N387 334 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 DEFB108BQ8NET1 73 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 TREX1Q9NSU2 369 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 P4HTMQ9NXG6 502 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 TAS2R5Q9NYW4 299 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 MYOFQ9NZM1 2061 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 PLXNB2O15031 1838 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 A0A1W2PN81 502 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 TXNDC12O95881 172 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 GASTP01350 101 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 DHRS4L1P0CG22 281 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 T-ENOLP0DO92 83 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 PIPP12273 146 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 COX5AP20674 150 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 GPX3P22352 226 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 CHRNA7P36544 502 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 CNN1P51911 297 aaKnown RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 SUMO1P63165 101 aaKnown RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 FOXK2Q01167 660 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 COL9A2Q14055 689 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF778Q96MU6 729 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 DUSP22Q9NRW4 184 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 ANKRD36A6QL64 1941 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 NRG2O14511 850 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 CALCBP10092 127 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 RRASP10301 218 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 BCL6P41182 706 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 RAB7AP51149 207 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF90Q03938 601 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 CTU2Q2VPK5 515 aaKnown RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF574Q6ZN55 896 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 ASCL5Q7RTU5 278 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 OR2Z1Q8NG97 314 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 SRRQ9GZT4 340 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 GAL3ST2Q9H3Q3 398 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 TMEM38AQ9H6F2 299 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 FLVCR1Q9Y5Y0 555 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 KPTNQ9Y664 436 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 PI4KAP42356 2102 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 ATAD5Q96QE3 1844 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 TGOLN2O43493 480 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 NME2P22392 152 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 POU4F3Q15319 338 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF385BQ569K4 471 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 SPEM1Q8N4L4 309 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 EIF4E3Q8N5X7 224 aaKnown RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 OR10R2Q8NGX6 335 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 OR4Q3Q8NH05 313 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 OLIG1Q8TAK6 271 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 RAB1CQ92928 201 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 GLIPR2Q9H4G4 154 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 SSC5DA1L4H1 1573 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 PRKRAO75569 313 aaKnown RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 GDNFP39905 211 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 TMEM267Q0VDI3 215 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-204ENST00000423058 PXDC1Q5TGL8 231 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 PTOV1Q86YD1 416 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 SLC15A4Q8N697 577 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 OR5M1Q8NGP8 315 aa6.25□□□□□ -1.41
SCN1A-204ENST00000423058 ERGIC1Q969X5 290 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms