RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ATG5Q9H1Y0 275 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 CDH20Q9HBT6 801 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 PROK2Q9HC23 129 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 ZNF275Q9NSD4 429 aaPredicted RBP7.43□□□□□ -1.22
USP54-203ENST00000418501 MALT1Q9UDY8 824 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 SLC5A6Q9Y289 635 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 SIRT4Q9Y6E7 314 aaPredicted RBP7.43□□□□□ -1.22
USP54-203ENST00000418501 SMIM30A4D0T7 59 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 LYRM1O43325 122 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 CSTBP04080 98 aaKnown RBP7.43□□□□□ -1.22
USP54-203ENST00000418501 SELEP16581 610 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 ATP1B3P54709 279 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 CLDN20P56880 219 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 ZNF121P58317 390 aaPredicted RBP7.43□□□□□ -1.22
USP54-203ENST00000418501 HIST3H3Q16695 136 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 FOXL2NBQ6ZUU3 175 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 OR2W3Q7Z3T1 314 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 AKAP14Q86UN6 197 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 LRRC18Q8N456 261 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 ST7LQ8TDW4 575 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 LRRC46Q96FV0 321 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 SIGLEC12Q96PQ1 595 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 USB1Q9BQ65 265 aaKnown RBP7.43□□□□□ -1.22
USP54-203ENST00000418501 LIN7BQ9HAP6 207 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 DDX28Q9NUL7 540 aaKnown RBP7.43□□□□□ -1.22
USP54-203ENST00000418501 NKIRAS2Q9NYR9 191 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 KLHDC2Q9Y2U9 406 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 PMF1-BGLAPU3KQ54 211 aa7.43□□□□□ -1.22
USP54-203ENST00000418501 UBE2QL1A1L167 161 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 C17orf51A8MQB3 221 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 VSTM5A8MXK1 200 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 NCR1O76036 304 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 CNOT4O95628 575 aaKnown RBP7.42□□□□□ -1.22
USP54-203ENST00000418501 CRHP06850 196 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 ITGA5P08648 1049 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 C4BPBP20851 252 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 PRSS3P35030 304 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 GSK3AP49840 483 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 FOXO1Q12778 655 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 CAMK2BQ13554 666 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 STEAP3Q658P3 488 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 MRPL21Q7Z2W9 205 aaKnown RBP7.42□□□□□ -1.22
USP54-203ENST00000418501 C1orf174Q8IYL3 243 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 TMEM123Q8N131 208 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 SEMA6DQ8NFY4 1073 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 CREB3L1Q96BA8 519 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 FAM71F1Q96KD3 344 aaPredicted RBP7.42□□□□□ -1.22
USP54-203ENST00000418501 UCN2Q96RP3 112 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 ABCG5Q9H222 651 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 ZNF552Q9H707 407 aaPredicted RBP7.42□□□□□ -1.22
USP54-203ENST00000418501 LHX6Q9UPM6 363 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 RALGAPA1Q6GYQ0 2036 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 GABARAPH6UMI1 98 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 GLSO94925 669 aaPredicted RBP7.42□□□□□ -1.22
USP54-203ENST00000418501 ADRA2AP08913 450 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 ELK1P19419 428 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 MMP15P51511 669 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 ZBTB37Q5TC79 503 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 CCBE1Q6UXH8 406 aaPredicted RBP7.42□□□□□ -1.22
USP54-203ENST00000418501 CCDC107Q8WV48 283 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 SPSB1Q96BD6 273 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 FGGYQ96C11 551 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 ZNF385AQ96PM9 386 aaKnown RBP7.42□□□□□ -1.22
USP54-203ENST00000418501 SRXN1Q9BYN0 137 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 BARHL1Q9BZE3 327 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 BCO1Q9HAY6 547 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 IFT46Q9NQC8 304 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 CLEC4AQ9UMR7 237 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 FUOMA2VDF0 154 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 MAGEB4O15481 346 aaPredicted RBP7.42□□□□□ -1.22
USP54-203ENST00000418501 PRAF2O60831 178 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 CD79AP11912 226 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 SNRPBP14678 240 aaKnown RBP7.42□□□□□ -1.22
USP54-203ENST00000418501 TUBG1P23258 451 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 SELENOPP49908 381 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 LHX2P50458 406 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 CAV3P56539 151 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 DYRK1AQ13627 763 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 AWAT2Q6E213 333 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 CORO6Q6QEF8 472 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 LYPD4Q6UWN0 246 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 ZNF627Q7L945 461 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 TMEM17Q86X19 198 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 CHST4Q8NCG5 386 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 NTNG2Q96CW9 530 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 HAVCR1Q96D42 359 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 ELL3Q9HB65 397 aaPredicted RBP7.42□□□□□ -1.22
USP54-203ENST00000418501 TUBG2Q9NRH3 451 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 DEPPQ9NTK1 212 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 RBFOX1Q9NWB1 397 aaKnown RBP7.42□□□□□ -1.22
USP54-203ENST00000418501 ING3Q9NXR8 418 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 KCNN3Q9UGI6 736 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 SPEF1Q9Y4P9 236 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 NUBP2Q9Y5Y2 271 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 ADAMTS20P59510 1910 aa7.42□□□□□ -1.22
USP54-203ENST00000418501 A0A1W2PQ09 198 aa7.41□□□□□ -1.22
USP54-203ENST00000418501 J3QW42 95 aa7.41□□□□□ -1.22
USP54-203ENST00000418501 ADAM10O14672 748 aa7.41□□□□□ -1.22
USP54-203ENST00000418501 EEF1E1O43324 174 aaKnown RBP7.41□□□□□ -1.22
USP54-203ENST00000418501 GFRA3O60609 400 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms