RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 EXTL2Q9UBQ6 330 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 TBC1D24Q9ULP9 559 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 SPATA2Q9UM82 520 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 CAMK2AQ9UQM7 478 aa12.1□□□□□ -0.47
PTPRF-202ENST00000372405 ATMQ13315 3056 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 DOCK7Q96N67 2140 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 ARPC4-TTLL3A0A0A6YYG9 625 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 YES1P07947 543 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 ADRB1P08588 477 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 DBHP09172 617 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 CST2P09228 141 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 PATE4P0C8F1 98 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 FSTP19883 344 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 OTX1P32242 354 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-202ENST00000372405 FOXG1P55316 489 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-202ENST00000372405 RIN1Q13671 783 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 RNPS1Q15287 305 aaKnown RBP12.09□□□□□ -0.47
PTPRF-202ENST00000372405 ELFN2Q5R3F8 820 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 NUFIP2Q7Z417 695 aaKnown RBP12.09□□□□□ -0.47
PTPRF-202ENST00000372405 SLC22A24Q8N4F4 322 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 SNIP1Q8TAD8 396 aaKnown RBP12.09□□□□□ -0.47
PTPRF-202ENST00000372405 OR51E1Q8TCB6 317 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 KCNJ15Q99712 375 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 MOB1AQ9H8S9 216 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 LIN7BQ9HAP6 207 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 PCDHGA9Q9Y5G4 932 aaKnown RBP12.09□□□□□ -0.47
PTPRF-202ENST00000372405 N6AMT1Q9Y5N5 214 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 SPTBN4Q9H254 2564 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 CACNA1GO43497 2377 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 A0A0G2JMP0 313 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 A0A0X1KG70 313 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 PSMD7P51665 324 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 IL18Q14116 193 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 PYDC2Q56P42 97 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 CHMP1BQ7LBR1 199 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 ADGRE4PQ86SQ3 457 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 SIAH3Q8IW03 269 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 ZADH2Q8N4Q0 377 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 ZNF283Q8N7M2 679 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 GDPD1Q8N9F7 314 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 OR4M2Q8NGB6 313 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 OR51A2Q8NGJ7 313 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 SLC25A38Q96DW6 304 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 NKX3-1Q99801 234 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-202ENST00000372405 PRDM14Q9GZV8 571 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 ZNF275Q9NSD4 429 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-202ENST00000372405 PARPBPQ9NWS1 579 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 ADAM30Q9UKF2 790 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 FOXJ3Q9UPW0 622 aa12.09□□□□□ -0.47
PTPRF-202ENST00000372405 A0A1W2PQ09 198 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 ANXA2P2A6NMY6 339 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 SYNGR3O43761 229 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 CD2P06729 351 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 ANXA2P07355 339 aaKnown RBP12.08□□□□□ -0.48
PTPRF-202ENST00000372405 ZNF32P17041 273 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 PTBP1P26599 531 aaKnown RBP eCLIP12.08□□□□□ -0.48
PTPRF-202ENST00000372405 ZNF169Q14929 603 aaPredicted RBP12.08□□□□□ -0.48
PTPRF-202ENST00000372405 TRIM16LQ309B1 348 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 ZNF774Q6NX45 483 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 FAM57BQ71RH2 274 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 SKA3Q8IX90 412 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 POC5Q8NA72 575 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 OR1J2Q8NGS2 313 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 ZNF671Q8TAW3 534 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 ADAT3Q96EY9 351 aaPredicted RBP12.08□□□□□ -0.48
PTPRF-202ENST00000372405 PLSCR2Q9NRY7 297 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 PLEK2Q9NYT0 353 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 ZNF224Q9NZL3 707 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 OR5V1Q9UGF6 321 aa12.08□□□□□ -0.48
PTPRF-202ENST00000372405 SLC22A20A6NK97 555 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 F5H5K5 113 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 RPL36A-HNRNPH2H7BZ11 118 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 SYT7O43581 403 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 SSX4O60224 188 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 APOA1P02647 267 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 ITGA5P08648 1049 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 OCMP0CE72 109 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-202ENST00000372405 CD37P11049 281 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 CRYGSP22914 178 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 CFPP27918 469 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 HGFACQ04756 655 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 PLA2G7Q13093 441 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 Q6ZS92 163 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 SPACA3Q8IXA5 215 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 PLPP7Q8NBV4 271 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 FGGYQ96C11 551 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 COX4I2Q96KJ9 171 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 CLCF1Q9UBD9 225 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 TTLL8A6PVC2 850 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 SGCEO43556 437 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 KRT33AO76009 404 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 IGLV3-1P01715 115 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 MMP7P09237 267 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-202ENST00000372405 SPNP16150 400 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 CCL1P22362 96 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 AGTR1P30556 359 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 ARF1P84077 181 aaKnown RBP12.07□□□□□ -0.48
PTPRF-202ENST00000372405 PSG4Q00888 419 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 RAB35Q15286 201 aa12.07□□□□□ -0.48
PTPRF-202ENST00000372405 C9orf135Q5VTT2 229 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms