RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 HTR2BP41595 481 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 MNX1P50219 401 aaPredicted RBP13.41□□□□□ -0.26
COL17A1-201ENST00000353479 GK2Q14410 553 aaPredicted RBP13.41□□□□□ -0.26
COL17A1-201ENST00000353479 ZNF718Q3SXZ3 478 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 C12orf73Q69YU5 71 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 OR5T1Q8NG75 326 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 OR2G2Q8NGZ5 317 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 JAM3Q9BX67 310 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 HAO2Q9NYQ3 351 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 TRABD2BA6NFA1 517 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 GPR137BO60478 399 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 GSTP1P09211 210 aaKnown RBP13.41□□□□□ -0.26
COL17A1-201ENST00000353479 TGM4P49221 684 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 SRP9P49458 86 aaKnown RBP13.41□□□□□ -0.26
COL17A1-201ENST00000353479 NPY4RP50391 375 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 PCK2Q16822 640 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 BEX5Q5H9J7 111 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 C10orf90Q96M02 699 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 PBDC1Q9BVG4 233 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 C1orf123Q9NWV4 160 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 SLC22A23A1A5C7 686 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 SIRPB1O00241 398 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 LGALS4P56470 323 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 OR10A3P58181 314 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 PSG6Q00889 435 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 SFRP5Q5T4F7 317 aa13.41□□□□□ -0.26
COL17A1-201ENST00000353479 C11orf54Q9H0W9 315 aaPredicted RBP13.41□□□□□ -0.26
COL17A1-201ENST00000353479 HSD17B6O14756 317 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 MT-CO2P00403 227 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 GLRA1P23415 457 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 F2RL1P55085 397 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 SORDQ00796 357 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 RELAQ04206 551 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 VSTM2LQ96N03 204 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 ASF1BQ9NVP2 202 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 HSPB2A8KAH6 182 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 SULT1B1O43704 296 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 RPA2P15927 270 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 POU3F3P20264 500 aaPredicted RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 AQP6Q13520 282 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 HSPB2Q16082 182 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 ALKBH6Q3KRA9 238 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 PHLDA2Q53GA4 152 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 TSNAXQ99598 290 aaKnown RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 SIAEQ9HAT2 523 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 ISYNA1Q9NPH2 558 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 PCYT1BQ9Y5K3 369 aaPredicted RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 PRICKLE3O43900 615 aaPredicted RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 TSPAN15O95858 294 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 SRD5A2P31213 254 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 RAB1AP62820 205 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 RNPS1Q15287 305 aaKnown RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 TOMM34Q15785 309 aaPredicted RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 RDH5Q92781 318 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 SEC22AQ96IW7 307 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 ZC3H10Q96K80 434 aaKnown RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 SLC25A31Q9H0C2 315 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 METTL17Q9H7H0 456 aaPredicted RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 EXO1Q9UQ84 846 aaKnown RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 A0A1W2PR80 420 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 PHF1O43189 567 aaPredicted RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 GPANK1O95872 356 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 TCRBP04435 133 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 PCBP3P57721 371 aaKnown RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 PLXDC2Q6UX71 529 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 TMPRSS7Q7RTY8 843 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 ZDHHC23Q8IYP9 409 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 ZNF808Q8N4W9 903 aaPredicted RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 KIRREL1Q96J84 757 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 A0A1W2PPH5 198 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 SHOXO15266 292 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 RGS11O94810 467 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 ARF1P84077 181 aaKnown RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 FJX1Q86VR8 437 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 ZNF573Q86YE8 665 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 OTOSQ8NHW6 89 aa13.4□□□□□ -0.26
COL17A1-201ENST00000353479 PTPMT1Q8WUK0 201 aaPredicted RBP13.4□□□□□ -0.26
COL17A1-201ENST00000353479 C21orf140B9A014 251 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 PTGS2P35354 604 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 RAC1P63000 192 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 CD226Q15762 336 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 OR1J1Q8NGS3 322 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 ZNF764Q96H86 408 aaPredicted RBP13.39□□□□□ -0.27
COL17A1-201ENST00000353479 SDHAF2Q9NX18 166 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 A0A0B4J203 849 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 FOXS1O43638 330 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 HAAOP46952 286 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 GSG1Q2KHT4 349 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 STAC2Q6ZMT1 411 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 LRP12Q9Y561 859 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 TET1Q8NFU7 2136 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 SH2D1BO14796 132 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 IFNA4P05014 189 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 SOX8P57073 446 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 KCNJ15Q99712 375 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 ARID2Q68CP9 1835 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 AIPO00170 330 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 WISP3O95389 354 aaPredicted RBP13.39□□□□□ -0.27
COL17A1-201ENST00000353479 SLC37A1P57057 533 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 FOXL2P58012 376 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms