RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 NOXO1Q8NFA2 376 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 OR6M1Q8NGM8 313 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 OR6N1Q8NGY5 312 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 ELMOD3Q96FG2 381 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 GPN1Q9HCN4 374 aaPredicted RBP9.18□□□□□ -0.94
LIMA1-201ENST00000341247 FBXO4Q9UKT5 387 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 F5H5K5 113 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 TP53I11O14683 189 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 PGA4P0DJD7 388 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 PGA3P0DJD8 388 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 OTX2P32243 289 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF121P58317 390 aaPredicted RBP9.18□□□□□ -0.94
LIMA1-201ENST00000341247 ZBTB37Q5TC79 503 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 FAM166AQ6J272 317 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 TEX261Q6UWH6 196 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 IDO2Q6ZQW0 420 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 MUC20Q8N307 709 aaPredicted RBP9.18□□□□□ -0.94
LIMA1-201ENST00000341247 MRPL13Q9BYD1 178 aaKnown RBP9.18□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF275Q9NSD4 429 aaPredicted RBP9.18□□□□□ -0.94
LIMA1-201ENST00000341247 SLC5A6Q9Y289 635 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 HS3ST3B1Q9Y662 390 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 U3KQ87 197 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 BSNQ9UPA5 3926 aa9.18□□□□□ -0.94
LIMA1-201ENST00000341247 TMEM265A0A087WTH1 108 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 A0A1W2PP11 408 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 C9J4A7 227 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 PRAF2O60831 178 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 TDGF1P13385 188 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF35P13682 527 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF20P17024 532 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 NAGAP17050 411 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 MSX1P28360 303 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 BDKRB2P30411 391 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 SLC6A9P48067 706 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 AP2S1P53680 142 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-201ENST00000341247 GRK1Q15835 563 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 DCAF12L2Q5VW00 463 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 AWAT2Q6E213 333 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.17□□□□□ -0.94
LIMA1-201ENST00000341247 ELP5Q8TE02 316 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 GPR137Q96N19 417 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 NECAB3Q96P71 396 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF385AQ96PM9 386 aaKnown RBP9.17□□□□□ -0.94
LIMA1-201ENST00000341247 B3GALT1Q9Y5Z6 326 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 FXYD6-FXYD2A0A087WZ82 144 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 UBE2QL1A1L167 161 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 AQP8O94778 261 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 GNB3P16520 340 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 P2RY4P51582 365 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 GABREP78334 506 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 THEM4Q5T1C6 240 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF626Q68DY1 528 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 CLEC1AQ8NC01 280 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 C15orf40Q8WUR7 153 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 FXYD6Q9H0Q3 95 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 CLEC4MQ9H2X3 399 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-201ENST00000341247 BANF2Q9H503 90 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 GPR84Q9NQS5 396 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 NPDC1Q9NQX5 325 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-201ENST00000341247 SLC39A1Q9NY26 324 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 PIPOXQ9P0Z9 390 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 RABL2AQ9UBK7 228 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-201ENST00000341247 RABL2BQ9UNT1 228 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 IGHV1-45A0A0A0MS14 117 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 ARPC5O15511 151 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 KLF7O75840 302 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-201ENST00000341247 RGS11O94810 467 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 CYB5AP00167 134 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 UBCP0CG48 685 aaKnown RBP9.17□□□□□ -0.94
LIMA1-201ENST00000341247 CDNFQ49AH0 187 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 LIN54Q6MZP7 749 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF767PQ75MW2 155 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 ANGPTL5Q86XS5 388 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 GPX8Q8TED1 209 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 NICN1Q9BSH3 213 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 RBM24Q9BX46 236 aaKnown RBP9.17□□□□□ -0.94
LIMA1-201ENST00000341247 SELENOIQ9C0D9 397 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 POFUT1Q9H488 388 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 HEXA-AS1Q9H8Q6 139 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 DKKL1Q9UK85 242 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 KLK13Q9UKR3 277 aa9.17□□□□□ -0.94
LIMA1-201ENST00000341247 MYO7BQ6PIF6 2116 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 COX6A1P12074 109 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 MMP16P51512 607 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 H2BFSP57053 126 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 EXOSC2Q13868 293 aaKnown RBP9.16□□□□□ -0.94
LIMA1-201ENST00000341247 PHYHD1Q5SRE7 291 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 THOC7Q6I9Y2 204 aaKnown RBP9.16□□□□□ -0.94
LIMA1-201ENST00000341247 YRDCQ86U90 279 aaKnown RBP9.16□□□□□ -0.94
LIMA1-201ENST00000341247 DEFB123Q8N688 67 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 OR1M1Q8NGA1 313 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 OR8B12Q8NGG6 310 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 THRSPQ92748 146 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 LIN37Q96GY3 246 aaPredicted RBP9.16□□□□□ -0.94
LIMA1-201ENST00000341247 NSG1A0A0A6YYJ2 146 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 A0A0G2JMM0 328 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 A0A1W2PPB8 328 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 A0A1W2PRS3 328 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 KIR3DP1A8MWS1 328 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 E9PLN8 166 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms