RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TTC3P53804 2025 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 IFITM5A6NNB3 132 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 SULT1A3P0DMM9 295 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 SULT1A4P0DMN0 295 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 MANEAQ5SRI9 462 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 SLC48A1Q6P1K1 146 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 LRRTM3Q86VH5 581 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 GSX1Q9H4S2 264 aaPredicted RBP12.67□□□□□ -0.38
CSPG4-201ENST00000308508 ASIC5Q9NY37 505 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 PRRC2BQ5JSZ5 2229 aaKnown RBP12.67□□□□□ -0.38
CSPG4-201ENST00000308508 COX7A2P2O60397 106 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 CYC1P08574 325 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 LIPNQ5VXI9 398 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 TMEM81Q6P7N7 255 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 GOT1L1Q8NHS2 421 aaPredicted RBP12.67□□□□□ -0.38
CSPG4-201ENST00000308508 DUS3LQ96G46 650 aaKnown RBP12.67□□□□□ -0.38
CSPG4-201ENST00000308508 TAAR6Q96RI8 345 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 FIZ1Q96SL8 496 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 WDR61Q9GZS3 305 aaKnown RBP12.67□□□□□ -0.38
CSPG4-201ENST00000308508 GPR173Q9NS66 373 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 SLC23A1Q9UHI7 598 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 COA3Q9Y2R0 106 aaPredicted RBP12.67□□□□□ -0.38
CSPG4-201ENST00000308508 GPX5O75715 221 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 NHLH1Q02575 133 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 NHLH2Q02577 135 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 CTU2Q2VPK5 515 aaKnown RBP12.67□□□□□ -0.38
CSPG4-201ENST00000308508 PRAMEF20Q5VT98 475 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 SIGIRRQ6IA17 410 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 SLC25A43Q8WUT9 341 aaPredicted RBP12.67□□□□□ -0.38
CSPG4-201ENST00000308508 DUSP13Q9UII6 198 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 TIMM9Q9Y5J7 89 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 SCRG1O75711 98 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 LIMS3P0CW19 117 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 LIMS4P0CW20 117 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 APOBEC1P41238 236 aaKnown RBP12.66□□□□□ -0.38
CSPG4-201ENST00000308508 MMP15P51511 669 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 EXD3Q8N9H8 876 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 HLA-CQ95604 372 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 SLC2A9Q9NRM0 540 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 LHX3Q9UBR4 397 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 UBR2Q8IWV8 1755 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 IGKV6-21A0A0C4DH24 114 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 QDPRP09417 244 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 CTSAP10619 480 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 SEMA3BQ13214 749 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 EPHX3Q9H6B9 360 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 ADAM11O75078 769 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 RRADP55042 308 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 LRRC3CA6NJW4 275 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 MAT1AQ00266 395 aaKnown RBP12.66□□□□□ -0.38
CSPG4-201ENST00000308508 PMS2P11Q13670 270 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 THEM4Q5T1C6 240 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 SLC16A12Q6ZSM3 486 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 WDR89Q96FK6 387 aaPredicted RBP12.66□□□□□ -0.38
CSPG4-201ENST00000308508 YIF1AO95070 293 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 NDUFB7P17568 137 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 CTBSQ01459 385 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 FAM26DQ5JW98 314 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 Q6ZSR9 355 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 CMTM4Q8IZR5 234 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 ARFGAP1Q8N6T3 406 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 SLC17A4Q9Y2C5 497 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 FAM166BA8MTA8 275 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 M0QZK8 103 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 GGCTO75223 188 aaKnown RBP12.66□□□□□ -0.38
CSPG4-201ENST00000308508 CSNK1G2P78368 415 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 DCAF12Q5T6F0 453 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 MAML2Q8IZL2 1156 aaPredicted RBP12.66□□□□□ -0.38
CSPG4-201ENST00000308508 ERGIC1Q969X5 290 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 LINC00597Q9H2U6 94 aa12.66□□□□□ -0.38
CSPG4-201ENST00000308508 TAZQ16635 292 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 RTL10Q7L3V2 364 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 HGDQ93099 445 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 Q96M85 177 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 S1PR3Q99500 378 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 IL23AQ9NPF7 189 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 PIK3C2AO00443 1686 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 IAPPP10997 89 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 RHBDD1Q8TEB9 315 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 CMC2Q9NRP2 79 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 B4GALT3O60512 393 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 WDR1O75083 606 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 MIDNQ504T8 468 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 COMMD5Q9GZQ3 224 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 ACER3Q9NUN7 267 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 GPM6AP51674 278 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 YPEL5P62699 121 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 SOWAHCQ53LP3 525 aaPredicted RBP12.65□□□□□ -0.38
CSPG4-201ENST00000308508 C11orf87Q6NUJ2 197 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 UBE3DQ7Z6J8 389 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 ZNF573Q86YE8 665 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 KIAA1958Q8N8K9 716 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 TOE1Q96GM8 510 aaKnown RBP12.65□□□□□ -0.38
CSPG4-201ENST00000308508 MS4A10Q96PG2 267 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 ZNF835Q9Y2P0 537 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 CLEC18AA5D8T8 446 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 CLEC12BQ2HXU8 276 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 DHRS7BQ6IAN0 325 aaPredicted RBP12.65□□□□□ -0.38
CSPG4-201ENST00000308508 CLEC18CQ8NCF0 446 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 CDCA3Q99618 268 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms