RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 TXNDC12O95881 172 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 NAAAQ02083 359 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 ANKRD55Q3KP44 614 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 FHL5Q5TD97 284 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 FAM166AQ6J272 317 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 APCDD1LQ8NCL9 501 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 SLC25A44Q96H78 314 aaPredicted RBP12.08□□□□□ -0.48
SKA3-201ENST00000298260 DCBLD2Q96PD2 775 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 SPACA5Q96QH8 159 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 METTL8Q9H825 291 aaKnown RBP12.08□□□□□ -0.48
SKA3-201ENST00000298260 UNKLQ9H9P5 680 aaKnown RBP12.08□□□□□ -0.48
SKA3-201ENST00000298260 DOK5Q9P104 306 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 INSL6Q9Y581 213 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 WIF1Q9Y5W5 379 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 COL6A3P12111 3177 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 C17orf51A8MQB3 221 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 UMAD1C9J7I0 102 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 ZNF354AO60765 605 aaPredicted RBP12.08□□□□□ -0.48
SKA3-201ENST00000298260 DUS4LO95620 317 aaKnown RBP12.08□□□□□ -0.48
SKA3-201ENST00000298260 EFEMP2O95967 443 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 AGR2O95994 175 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 HLA-GP17693 338 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 PLPP4Q5VZY2 271 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 NSUN5P2Q63ZY6 315 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 LCN10Q6JVE6 187 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 ZNF574Q6ZN55 896 aaPredicted RBP12.08□□□□□ -0.48
SKA3-201ENST00000298260 PRRT1Q99946 306 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 NUDT9Q9BW91 350 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 CHST5Q9GZS9 411 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 STARD5Q9NSY2 213 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 PISDQ9UG56 409 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 RCL1Q9Y2P8 373 aaKnown RBP12.08□□□□□ -0.48
SKA3-201ENST00000298260 RFNGQ9Y644 331 aa12.08□□□□□ -0.48
SKA3-201ENST00000298260 PRRT4C9JH25 899 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 C11orf98E9PRG8 122 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 AK1P00568 194 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 SNRPCP09234 159 aaKnown RBP12.07□□□□□ -0.48
SKA3-201ENST00000298260 TACR3P29371 465 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 MESTQ5EB52 335 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 SLC35D3Q5M8T2 416 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 ULK3Q6PHR2 472 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 CRIPAKQ8N1N5 446 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 UBAC2Q8NBM4 344 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 OR52R1Q8NGF1 315 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 OR4C3Q8NH37 302 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 MAFIPQ8WZ33 124 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 BADQ92934 168 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 TMEM106CQ9BVX2 250 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 MYOZ1Q9NP98 299 aaPredicted RBP12.07□□□□□ -0.48
SKA3-201ENST00000298260 LRIT1Q9P2V4 623 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 DBX1A6NMT0 343 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 C2orf74A8MZ97 194 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 TERTO14746 1132 aaKnown RBP12.07□□□□□ -0.48
SKA3-201ENST00000298260 RAMP1O60894 148 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 LRG1P02750 347 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 IFNA6P05013 189 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 S100A2P29034 98 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 RAB5CP51148 216 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 ZNF84P51523 738 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 RSU1Q15404 277 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 ITPRIPL2Q3MIP1 535 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 CLEC18BQ6UXF7 455 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 ASB5Q8WWX0 329 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 TMEM230Q96A57 120 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 DHDHQ9UQ10 334 aa12.07□□□□□ -0.48
SKA3-201ENST00000298260 ASCC3Q8N3C0 2202 aaKnown RBP12.07□□□□□ -0.48
SKA3-201ENST00000298260 GON4LQ3T8J9 2241 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 TRBV6-7A0A0A0MS04 114 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 NUDT19A8MXV4 375 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 TSPAN15O95858 294 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 MYOGP15173 224 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 HOXA5P20719 270 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 ARRB1P49407 418 aaPredicted RBP12.06□□□□□ -0.48
SKA3-201ENST00000298260 LSM6P62312 80 aaKnown RBP12.06□□□□□ -0.48
SKA3-201ENST00000298260 SPEM2Q0P670 501 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 SSX2Q16385 188 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 ALG10Q5BKT4 473 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 TGIF2LXQ8IUE1 241 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 CDRT4Q8N9R6 151 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 MR1Q95460 341 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 TOX2Q96NM4 488 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 TAAR9Q96RI9 348 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 SSX3Q99909 188 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 ATG101Q9BSB4 218 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 GAR1Q9NY12 217 aaKnown RBP12.06□□□□□ -0.48
SKA3-201ENST00000298260 SLC5A6Q9Y289 635 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 KPTNQ9Y664 436 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 NOTCH4Q99466 2003 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 IGKV1D-42A0A075B6H8 117 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 BTBD17A6NE02 478 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 ARPC3O15145 178 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 SLC31A2O15432 143 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 TIMP1P01033 207 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 SOD3P08294 240 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 SPARCP09486 303 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 PAX6P26367 422 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 RPS23P62266 143 aaKnown RBP12.06□□□□□ -0.48
SKA3-201ENST00000298260 GUK1Q16774 197 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 PNLIPRP3Q17RR3 467 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 LINC00114Q6XXX2 140 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms