RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CXorf65A6NEN9 183 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 P2RY10O00398 339 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 UBE2CO00762 179 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 YKT6O15498 198 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 RPS10P46783 165 aaKnown RBP12.88□□□□□ -0.35
SDC1-201ENST00000254351 SEC13P55735 322 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 NDUFA6P56556 154 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 CD226Q15762 336 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 CHRDL2Q6WN34 429 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 ZNF595Q8IYB9 648 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 PNLDC1Q8NA58 520 aaKnown RBP12.88□□□□□ -0.35
SDC1-201ENST00000254351 RERGQ96A58 199 aaPredicted RBP12.88□□□□□ -0.35
SDC1-201ENST00000254351 MEGF10Q96KG7 1140 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 OR2A5Q96R48 311 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 PRRT1Q99946 306 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 GGACTQ9BVM4 153 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 PUS1Q9Y606 427 aaKnown RBP eCLIP12.88□□□□□ -0.35
SDC1-201ENST00000254351 ARHGEF17Q96PE2 2063 aaPredicted RBP12.88□□□□□ -0.35
SDC1-201ENST00000254351 TEX13DA0A0J9YY54 714 aaPredicted RBP12.88□□□□□ -0.35
SDC1-201ENST00000254351 PMS2P1A4D2B8 440 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 K7EQS6 105 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 ATXN7O15265 892 aaPredicted RBP12.88□□□□□ -0.35
SDC1-201ENST00000254351 ADH1AP07327 375 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 MAOAP21397 527 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 ACTR1BP42025 376 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 PRPS1P60891 318 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 ACTR1AP61163 376 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 DEFA6Q01524 100 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 RASGEF1BQ0VAM2 473 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 C7orf61Q8IZ16 206 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 ZNF101Q8IZC7 436 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 SLC30A7Q8NEW0 376 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 TCTEX1D2Q8WW35 142 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 ARL5BQ96KC2 179 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 BANF2Q9H503 90 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 MRPS23Q9Y3D9 190 aaKnown RBP12.88□□□□□ -0.35
SDC1-201ENST00000254351 XKRYO14609 159 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 ARPC3O15145 178 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 ZNF354AO60765 605 aaPredicted RBP12.87□□□□□ -0.35
SDC1-201ENST00000254351 LAP3P28838 519 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 DRD3P35462 400 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 BTG2P78543 158 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 CYB5R2Q6BCY4 276 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 LPCAT3Q6P1A2 487 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 SPRED2Q7Z698 418 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 COMMD2Q86X83 199 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 SKA3Q8IX90 412 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 ZNF561Q8N587 486 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 ST6GALNAC5Q9BVH7 336 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 NRSN2Q9GZP1 204 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 RENP00797 406 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 GSK3AP49840 483 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 RAB2AP61019 212 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 RPS15AP62244 130 aaKnown RBP12.87□□□□□ -0.35
SDC1-201ENST00000254351 ACTBL2Q562R1 376 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 NPSR1Q6W5P4 371 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 ADGRE4PQ86SQ3 457 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 ZNF383Q8NA42 475 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 FGGYQ96C11 551 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 CCDC3Q9BQI4 270 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 CNTD2Q9H8S5 307 aa12.87□□□□□ -0.35
SDC1-201ENST00000254351 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.87□□□□□ -0.35
SDC1-201ENST00000254351 A0A1W2PP11 408 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 CD1AP06126 327 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 RAB5AP20339 215 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 PPICP45877 212 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 CLDN6P56747 220 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 MGAT2Q10469 447 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 ZNF74Q16587 644 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 C10orf91Q5T1B1 145 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 FIGLAQ6QHK4 219 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 ZNF679Q8IYX0 411 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 ZNF565Q8N9K5 539 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 OR4K15Q8NH41 348 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 PLA2G2EQ9NZK7 142 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 RCL1Q9Y2P8 373 aaKnown RBP12.86□□□□□ -0.35
SDC1-201ENST00000254351 LSM5Q9Y4Y9 91 aaKnown RBP12.86□□□□□ -0.35
SDC1-201ENST00000254351 SPACA6W5XKT8 324 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 EIF2S3P41091 472 aaKnown RBP12.86□□□□□ -0.35
SDC1-201ENST00000254351 SLC17A1Q14916 467 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 ZNF542PQ5EBM4 170 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 FAM78AQ5JUQ0 283 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 APCDD1LQ8NCL9 501 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 OR52N4Q8NGI2 321 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 CA5BP1Q8WTZ4 195 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 TMEM41AQ96HV5 264 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 STACQ99469 402 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 CACFD1Q9UGQ2 172 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 OBSL1O75147 1896 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 ZNF727A8MUV8 499 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 PRAMEF26H0Y7S4 382 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 TSPAN15O95858 294 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 TXNDC12O95881 172 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 PRH1P02810 166 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 GLRA1P23415 457 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 TACR3P29371 465 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 GPX4P36969 197 aaPredicted RBP12.86□□□□□ -0.35
SDC1-201ENST00000254351 TMEM52BQ4KMG9 183 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 CLEC18BQ6UXF7 455 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 UNQ6494/PRO21346Q6UXR6 183 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms