RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SPATA4Q8NEY3 305 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 OR4S1Q8NGB4 309 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 OR9A1PQ8NGU1 263 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 DOK4Q8TEW6 326 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 MCUR1Q96AQ8 359 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 TMEM45BQ96B21 275 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 TMEM19Q96HH6 336 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ATP6V1G3Q96LB4 118 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 SGK494Q96LW2 274 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 FOPNLQ96NB1 174 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ANKRD27Q96NW4 1050 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ALKBH7Q9BT30 221 aaPredicted RBP3.56□□□□□ -1.84
LINC00540-201ENST00000611481 C1QTNF6Q9BXI9 259 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 CHIAQ9BZP6 476 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 RACGAP1Q9H0H5 632 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 CENPHQ9H3R5 247 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 RIMS4Q9H426 269 aaPredicted RBP3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ZNF665Q9H7R5 613 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 FKRPQ9H9S5 495 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 CLK4Q9HAZ1 481 aaKnown RBP3.56□□□□□ -1.84
LINC00540-201ENST00000611481 NOX4Q9NPH5 578 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 IL36RNQ9UBH0 155 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 P2RX2Q9UBL9 471 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ZNF490Q9ULM2 529 aaPredicted RBP3.56□□□□□ -1.84
LINC00540-201ENST00000611481 B9D1Q9UPM9 204 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 OBSCNQ5VST9 7968 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 SRRM5B3KS81 715 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 F8VZ95 297 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 KLF11O14901 512 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 CIDEAO60543 219 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 ICOSLGO75144 302 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 PABPC4LP0CB38 370 aaKnown RBP3.55□□□□□ -1.84
LINC00540-201ENST00000611481 CT45A8P0DMV1 189 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 CT45A9P0DMV2 189 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 PNMTP11086 282 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 GGT1P19440 569 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 CD1BP29016 333 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 SFTPDP35247 375 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 MNDAP41218 407 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 ALDH3B1P43353 468 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 AMTP48728 403 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 TMED10P49755 219 aaKnown RBP3.55□□□□□ -1.84
LINC00540-201ENST00000611481 PPOXP50336 477 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 ATP4BP51164 291 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 GEMP55040 296 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 B3GALT5-AS1P59052 145 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 SEC61BP60468 96 aaKnown RBP3.55□□□□□ -1.84
LINC00540-201ENST00000611481 RGS1Q08116 209 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 TGM3Q08188 693 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 FGL1Q08830 312 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 HNF4GQ14541 408 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 HERPUD1Q15011 391 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 CTF1Q16619 201 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 CT45A2Q5DJT8 189 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 TIMM23BQ5SRD1 257 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 METTL11BQ5VVY1 283 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 TTC19Q6DKK2 380 aaPredicted RBP3.55□□□□□ -1.84
LINC00540-201ENST00000611481 TMEM225Q6GV28 225 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 OR4A47Q6IF82 309 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 TFAP2EQ6VUC0 442 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 SATL1Q86VE3 508 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 SPATA24Q86W54 205 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 MAP7D3Q8IWC1 876 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 PRR22Q8IZ63 422 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 LYG1Q8N1E2 194 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 SMYD1Q8NB12 490 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 BBS1Q8NFJ9 593 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 BPIFCQ8NFQ6 507 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 OR52N5Q8NH56 324 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 OR52I2Q8NH67 350 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 OR5R1Q8NH85 324 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 TSEN15Q8WW01 171 aaKnown RBP3.55□□□□□ -1.84
LINC00540-201ENST00000611481 SPRYD4Q8WW59 207 aaPredicted RBP3.55□□□□□ -1.84
LINC00540-201ENST00000611481 POP5Q969H6 163 aaKnown RBP3.55□□□□□ -1.84
LINC00540-201ENST00000611481 COQ2Q96H96 371 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 SENP5Q96HI0 755 aaPredicted RBP3.55□□□□□ -1.84
LINC00540-201ENST00000611481 PANX2Q96RD6 677 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 NDNQ99608 321 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 APOL2Q9BQE5 337 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 TSSK1BQ9BXA7 367 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 OSBPL11Q9BXB4 747 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 MAGT1Q9H0U3 335 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 PARVAQ9NVD7 372 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 RMND1Q9NWS8 449 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 PTTG2Q9NZH5 202 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 KLRF1Q9NZS2 232 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 ERVK-18Q9QC07 812 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 PEF1Q9UBV8 284 aaKnown RBP3.55□□□□□ -1.84
LINC00540-201ENST00000611481 GMEB1Q9Y692 573 aa3.55□□□□□ -1.84
LINC00540-201ENST00000611481 DMBT1Q9UGM3 2413 aaPredicted RBP3.54□□□□□ -1.84
LINC00540-201ENST00000611481 A0A0G2JN53 185 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 A0A1B0GVY2 172 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 SH3PXD2BA1X283 911 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 RNF222A6NCQ9 220 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 OR51F1A6NGY5 319 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 C4orf51C9J302 202 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 ARPC2O15144 300 aa3.54□□□□□ -1.84
LINC00540-201ENST00000611481 PPIHO43447 177 aaKnown RBP3.54□□□□□ -1.84
LINC00540-201ENST00000611481 TRAF3IP2O43734 574 aaPredicted RBP3.54□□□□□ -1.84
LINC00540-201ENST00000611481 OR1F1O43749 312 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms