RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 ZMAT1Q5H9K5 638 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 ZNF770Q6IQ21 691 aaPredicted RBP12.77□□□□□ -0.37
LIG1-215ENST00000597901 ZNF620Q6ZNG0 422 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 Q6ZR03 302 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 DHFR2Q86XF0 187 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 LINC00471Q8N535 108 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 CCDC197Q8NCU1 140 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 SLC26A10Q8NG04 563 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 OR5L1Q8NGL2 311 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 OR4C15Q8NGM1 316 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 OR51F2Q8NH61 342 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 COQ7Q99807 217 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 CDADC1Q9BWV3 514 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 EGLN3Q9H6Z9 239 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 ATPIF1Q9UII2 106 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 POLR1DQ9Y2S0 133 aa12.77□□□□□ -0.37
LIG1-215ENST00000597901 TRAV20A0A0B4J274 112 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 DEAF1O75398 565 aaPredicted RBP12.76□□□□□ -0.37
LIG1-215ENST00000597901 RAC2P15153 192 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 CALB2P22676 271 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 MAGEA2P43356 314 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 RGS6P49758 472 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 SRSF2Q01130 221 aaKnown RBP12.76□□□□□ -0.37
LIG1-215ENST00000597901 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.76□□□□□ -0.37
LIG1-215ENST00000597901 COX10Q12887 443 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 PPP1R8Q12972 351 aaKnown RBP12.76□□□□□ -0.37
LIG1-215ENST00000597901 HLXQ14774 488 aaPredicted RBP12.76□□□□□ -0.37
LIG1-215ENST00000597901 KRTAP24-1Q3LI83 254 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 SLC36A3Q495N2 470 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 CLEC12AQ5QGZ9 265 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 ZNF362Q5T0B9 420 aaPredicted RBP12.76□□□□□ -0.37
LIG1-215ENST00000597901 LIPNQ5VXI9 398 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 LCN8Q6JVE9 175 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 FAHD2BQ6P2I3 314 aaPredicted RBP12.76□□□□□ -0.37
LIG1-215ENST00000597901 SDR9C7Q8NEX9 313 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 OR2Z1Q8NG97 314 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 OR9Q2Q8NGE9 314 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 FAHD2AQ96GK7 314 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 BTBD10Q9BSF8 475 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 HDHD2Q9H0R4 259 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 MAGIXQ9H6Y5 334 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 IL20Q9NYY1 176 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 COL6A5A8TX70 2615 aa12.76□□□□□ -0.37
LIG1-215ENST00000597901 J3QW42 95 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 PLPP2O43688 288 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 CUBNO60494 3623 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 CCNB2O95067 398 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 HLA-DQA2P01906 255 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 TNFSF4P23510 183 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 GGT2P36268 569 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 ERFP50548 548 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 OR2T2Q6IF00 324 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 SLC18B1Q6NT16 456 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 RPL13AP3Q6NVV1 102 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 FBXW12Q6X9E4 464 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 RASSF6Q6ZTQ3 369 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 PEG10Q86TG7 708 aaKnown RBP12.75□□□□□ -0.37
LIG1-215ENST00000597901 LINC00346Q8IVM7 164 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 OR2AJ1Q8NGZ0 328 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 APOBEC3DQ96AK3 386 aaPredicted RBP12.75□□□□□ -0.37
LIG1-215ENST00000597901 RAB39BQ96DA2 213 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 PITX2Q99697 317 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 MUC13Q9H3R2 512 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 FN3KQ9H479 309 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 TAS2R1Q9NYW7 299 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 PTTG3PQ9NZH4 202 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 CYB5R1Q9UHQ9 305 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 METRNQ9UJH8 293 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 CDH10Q9Y6N8 788 aa12.75□□□□□ -0.37
LIG1-215ENST00000597901 BHLHE40O14503 412 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 IGHV2-5P01817 119 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 SBK2P0C263 348 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 TNFRSF1AP19438 455 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 RBMXP38159 391 aaKnown RBP12.74□□□□□ -0.37
LIG1-215ENST00000597901 ECH1Q13011 328 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 HNRNPA0Q13151 305 aaKnown RBP12.74□□□□□ -0.37
LIG1-215ENST00000597901 MICAQ29983 383 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 KRTAP27-1Q3LI81 207 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 OR2T5Q6IEZ7 315 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 COLCA1Q6ZS62 124 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 NAA40Q86UY6 237 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 OR5AS1Q8N127 324 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 ATG16L2Q8NAA4 619 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 OR52L1Q8NGH7 329 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 OR2T29Q8NH02 315 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 ZNRF4Q8WWF5 429 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 PLA2G12AQ9BZM1 189 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 G6PC2Q9NQR9 355 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 TMEM106BQ9NUM4 274 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 MRPL22Q9NWU5 206 aaKnown RBP12.74□□□□□ -0.37
LIG1-215ENST00000597901 DCAF16Q9NXF7 216 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 IL19Q9UHD0 177 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 NPTNQ9Y639 398 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 SVEP1Q4LDE5 3571 aa12.74□□□□□ -0.37
LIG1-215ENST00000597901 F5H5K5 113 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 DYNC1I1O14576 645 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 SURF4O15260 269 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 ZNF823P16415 610 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 PYCR1P32322 319 aa12.73□□□□□ -0.37
LIG1-215ENST00000597901 FAM98BQ52LJ0 330 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms