RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 CYB5R1Q9UHQ9 305 aa13.83□□□□□ -0.2
TRIM28-206ENST00000595974 RIIAD1A6NNX1 92 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 A8MV72 311 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-206ENST00000595974 LYNX1G3V0Z9 82 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 ADH4P08319 380 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 LYNX1P0DP58 116 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 PYCR1P32322 319 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 CHN2P52757 468 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 SLC25A1P53007 311 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 CCL8P80075 99 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 DBPQ10586 325 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-206ENST00000595974 ECH1Q13011 328 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 CRMP1Q14194 572 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 CYB5R2Q6BCY4 276 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 CFAP77Q6ZQR2 320 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 TMEM179BQ7Z7N9 219 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 LINC00346Q8IVM7 164 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 OR2AJ1Q8NGZ0 328 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 GTF3AQ92664 365 aaKnown RBP13.82□□□□□ -0.2
TRIM28-206ENST00000595974 NMNAT2Q9BZQ4 307 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 ZNF556Q9HAH1 456 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 CMC2Q9NRP2 79 aa13.82□□□□□ -0.2
TRIM28-206ENST00000595974 MRPL22Q9NWU5 206 aaKnown RBP13.82□□□□□ -0.2
TRIM28-206ENST00000595974 H3BN98 237 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 TIMM8AO60220 97 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-206ENST00000595974 LILRA1O75019 489 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 DEAF1O75398 565 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-206ENST00000595974 CRLF1O75462 422 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 RP2O75695 350 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 DBHP09172 617 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 ZNF823P16415 610 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 ZNF16P17020 682 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-206ENST00000595974 ZNF3P17036 446 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 KITLGP21583 273 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 GRK5P34947 590 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 GGT2P36268 569 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 GPR6P46095 362 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-206ENST00000595974 OR9Q1Q8NGQ5 310 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 HPS1Q92902 700 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 YIPF5Q969M3 257 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 APOBEC3DQ96AK3 386 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-206ENST00000595974 SLCO4A1Q96BD0 722 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 DIRC2Q96SL1 478 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 PITX2Q99697 317 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 ATF6BQ99941 703 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 POFUT1Q9H488 388 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 SAP30LQ9HAJ7 183 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 ZNF275Q9NSD4 429 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-206ENST00000595974 DECR2Q9NUI1 292 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 ZDHHC8Q9ULC8 765 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 STARD10Q9Y365 291 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 COMMD3-BMI1R4GMX3 469 aa13.81□□□□□ -0.2
TRIM28-206ENST00000595974 ZSCAN5BA6NJL1 495 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 TPD52L2O43399 206 aaKnown RBP13.8□□□□□ -0.2
TRIM28-206ENST00000595974 IGHV1-46P01743 117 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 ANXA8P13928 327 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 SPI1P17947 270 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 COL8A2P25067 703 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 ERFP50548 548 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 BLVRAP53004 296 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 TMEM33P57088 247 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 PSG7Q13046 419 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 KRTAP27-1Q3LI81 207 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 SLC27A4Q6P1M0 643 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 OR5L1Q8NGL2 311 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 DNAJC9Q8WXX5 260 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 NRBF2Q96F24 287 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 TMEM160Q9NX00 188 aa13.8□□□□□ -0.2
TRIM28-206ENST00000595974 PURGQ9UJV8 347 aaKnown RBP13.8□□□□□ -0.2
TRIM28-206ENST00000595974 IGHV1-69-2A0A0G2JMI3 117 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 TVP23AA6NH52 213 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 SPRY3O43610 288 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 CD55P08174 381 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 RAC2P15153 192 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 FMO3P31513 532 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 CRYBB2P43320 205 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 TRIP10Q15642 601 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 TSTQ16762 297 aaKnown RBP13.79□□□□□ -0.2
TRIM28-206ENST00000595974 FAM166AQ6J272 317 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 SHQ1Q6PI26 577 aaKnown RBP13.79□□□□□ -0.2
TRIM28-206ENST00000595974 FBXW12Q6X9E4 464 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 USP51Q70EK9 711 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 HS3ST5Q8IZT8 346 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 IQCF1Q8N6M8 205 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 OR51L1Q8NGJ5 315 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 ZNRF4Q8WWF5 429 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 PTP4A1Q93096 173 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 HAVCR1Q96D42 359 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 MSI2Q96DH6 328 aaKnown RBP13.79□□□□□ -0.2
TRIM28-206ENST00000595974 ELMOD3Q96FG2 381 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 EGLN1Q9GZT9 426 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 PNRC2Q9NPJ4 139 aaKnown RBP13.79□□□□□ -0.2
TRIM28-206ENST00000595974 DYSFO75923 2080 aa13.79□□□□□ -0.2
TRIM28-206ENST00000595974 LRP5LA4QPB2 252 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 PPIHO43447 177 aaKnown RBP13.78□□□□□ -0.2
TRIM28-206ENST00000595974 TIPRLO75663 272 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 GYPBP06028 91 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 ACSM4P0C7M7 580 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 OSMP13725 252 aa13.78□□□□□ -0.2
TRIM28-206ENST00000595974 PAICSP22234 425 aaKnown RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms