RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 RNF223E7ERA6 249 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 PRR23D1E9PI22 279 aaPredicted RBP12.46□□□□□ -0.41
VRK3-206ENST00000594090 SMAD7O15105 426 aaKnown RBP12.46□□□□□ -0.41
VRK3-206ENST00000594090 IGHV3-13P01766 116 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 PRR23D2P0DMB1 279 aaPredicted RBP12.46□□□□□ -0.41
VRK3-206ENST00000594090 NAT2P11245 290 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 GCH1P30793 250 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 ENTPD1P49961 510 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 BLVRAP53004 296 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 PCK2Q16822 640 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 KRTAP27-1Q3LI81 207 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 PLBD1Q6P4A8 553 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 FAM168AQ92567 244 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 PLEKHA8Q96JA3 519 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 CIB1Q99828 191 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 RHNO1Q9BSD3 238 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 OR51V1Q9H2C8 321 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 POFUT1Q9H488 388 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 MYOZ1Q9NP98 299 aaPredicted RBP12.46□□□□□ -0.41
VRK3-206ENST00000594090 HINT3Q9NQE9 182 aaKnown RBP12.46□□□□□ -0.41
VRK3-206ENST00000594090 GPR160Q9UJ42 338 aa12.46□□□□□ -0.41
VRK3-206ENST00000594090 SAC3D1A6NKF1 404 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 J3QW42 95 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 GLCEO94923 617 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 SPARCP09486 303 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 IGFBP5P24593 272 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 PDLIM4P50479 330 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 PPP2R2BQ00005 443 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 ECH1Q13011 328 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 PTGES3Q15185 160 aaKnown RBP12.45□□□□□ -0.42
VRK3-206ENST00000594090 RSPO1Q2MKA7 263 aaPredicted RBP12.45□□□□□ -0.42
VRK3-206ENST00000594090 TEX30Q5JUR7 227 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 BIVMQ86UB2 503 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 OR10S1Q8NGN2 331 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 C10orf105Q8TEF2 133 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 SNX33Q8WV41 574 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 REG4Q9BYZ8 158 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 TVP23BQ9NYZ1 205 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 ENOPH1Q9UHY7 261 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 TMEFF2Q9UIK5 374 aaPredicted RBP12.45□□□□□ -0.42
VRK3-206ENST00000594090 RTTNQ86VV8 2226 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 ZNF593O00488 134 aaPredicted RBP12.45□□□□□ -0.42
VRK3-206ENST00000594090 PRODHO43272 600 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 DAOP14920 347 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 TUBG1P23258 451 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 EPHA2P29317 976 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 GSTT1P30711 240 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 RGS6P49758 472 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 SNAPC1Q16533 368 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 MOGQ16653 247 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 DCXRQ7Z4W1 244 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 ERI1Q8IV48 349 aaKnown RBP12.45□□□□□ -0.42
VRK3-206ENST00000594090 CPOQ8IVL8 374 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 C10orf67Q8IYJ2 551 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 GTF3AQ92664 365 aaKnown RBP12.45□□□□□ -0.42
VRK3-206ENST00000594090 ZMYND19Q96E35 227 aaPredicted RBP12.45□□□□□ -0.42
VRK3-206ENST00000594090 COG8Q96MW5 612 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 INTS14Q96SY0 518 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 SMR3AQ99954 134 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 OSBPL10Q9BXB5 764 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 GSX1Q9H4S2 264 aaPredicted RBP12.45□□□□□ -0.42
VRK3-206ENST00000594090 MARCH7Q9H992 704 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 TUBG2Q9NRH3 451 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 DDX28Q9NUL7 540 aaKnown RBP12.45□□□□□ -0.42
VRK3-206ENST00000594090 STARD10Q9Y365 291 aa12.45□□□□□ -0.42
VRK3-206ENST00000594090 CHD3Q12873 2000 aaKnown RBP12.44□□□□□ -0.42
VRK3-206ENST00000594090 LOC390937A0A1W2PQ73 354 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 ZAR1LA6NP61 321 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 C17orf100A8MU93 164 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 F5H5K5 113 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 ACSM4P0C7M7 580 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 SLC25A16P16260 332 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 SLC2A5P22732 501 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 PSG7Q13046 419 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 CARTPTQ16568 116 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 KLHL12Q53G59 568 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 SLX4IPQ5VYV7 408 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 CXXC5Q7LFL8 322 aaKnown RBP12.44□□□□□ -0.42
VRK3-206ENST00000594090 TIGD4Q8IY51 512 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 MAPK1IP1LQ8NDC0 245 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 BBS1Q8NFJ9 593 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 OR6N2Q8NGY6 317 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 ST7LQ8TDW4 575 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 APOBEC3DQ96AK3 386 aaPredicted RBP12.44□□□□□ -0.42
VRK3-206ENST00000594090 RBM4BQ9BQ04 359 aaKnown RBP12.44□□□□□ -0.42
VRK3-206ENST00000594090 PRRG3Q9BZD7 231 aa12.44□□□□□ -0.42
VRK3-206ENST00000594090 CR1P17927 2039 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 FLNAP21333 2647 aaKnown RBP12.43□□□□□ -0.42
VRK3-206ENST00000594090 A0A096LNT2 108 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 ZNF878C9JN71 531 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 M0R135 149 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 NDUFS8O00217 210 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 PRKYO43930 277 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 TIMM8AO60220 97 aaPredicted RBP12.43□□□□□ -0.42
VRK3-206ENST00000594090 SELENOFO60613 162 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 NCR1O76036 304 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 MT-ND5P03915 603 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 MAGEB1P43366 347 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 MMP15P51511 669 aa12.43□□□□□ -0.42
VRK3-206ENST00000594090 SLC35D3Q5M8T2 416 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms