RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 SNNO75324 88 aaPredicted RBP10.54□□□□□ -0.72
SS18-219ENST00000581570 SCG5P05408 212 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 TSPAN19P0C672 248 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 CD247P20963 164 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 PSMB10P40306 273 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 SCRN3Q0VDG4 424 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 KRT71Q3SY84 523 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 PAGE3Q5JUK9 113 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 Q6ZTK2 550 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 C19orf18Q8NEA5 215 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 ZNF582Q96NG8 517 aaPredicted RBP10.54□□□□□ -0.72
SS18-219ENST00000581570 WACQ9BTA9 647 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 PCDHAC1Q9H158 963 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 POLE4Q9NR33 117 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 PTTG3PQ9NZH4 202 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 ERVK-18Q9QC07 812 aa10.54□□□□□ -0.72
SS18-219ENST00000581570 TRBV5-3A0A0A0MS03 114 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 MLNRO43193 412 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 SGCEO43556 437 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 VSIG8P0DPA2 414 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 STX1BP61266 288 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 RPL27P61353 136 aaKnown RBP10.53□□□□□ -0.72
SS18-219ENST00000581570 HERPUD1Q15011 391 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 ALG10Q5BKT4 473 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 MAVSQ7Z434 540 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 FUNDC1Q8IVP5 155 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 NKAIN4Q8IVV8 208 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 PNLDC1Q8NA58 520 aaKnown RBP10.53□□□□□ -0.72
SS18-219ENST00000581570 C11orf65Q8NCR3 313 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 TMEM255BQ8WV15 326 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 LIPHQ8WWY8 451 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 SLC7A6Q92536 515 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 SPDL1Q96EA4 605 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 SIRPDQ9H106 197 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 MMADHCQ9H3L0 296 aaPredicted RBP10.53□□□□□ -0.72
SS18-219ENST00000581570 EMC7Q9NPA0 242 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 C20orf141Q9NUB4 165 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 TMCC3Q9ULS5 477 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 FAM96BQ9Y3D0 163 aa10.53□□□□□ -0.72
SS18-219ENST00000581570 BTBD17A6NE02 478 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 IGF2P01344 180 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 TGFBR2P37173 567 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 RBM34P42696 430 aaKnown RBP10.52□□□□□ -0.73
SS18-219ENST00000581570 ARF6P62330 175 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 COX10Q12887 443 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 OXLD1Q5BKU9 147 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 SLC35E4Q6ICL7 350 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 BLOC1S3Q6QNY0 202 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 FBXW12Q6X9E4 464 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 PDZD9Q8IXQ8 264 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 GALNT4Q8N4A0 578 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 ANKRD42Q8N9B4 389 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 PCYOX1LQ8NBM8 494 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 OR5L1Q8NGL2 311 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 OR11L1Q8NGX0 322 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 SLC26A7Q8TE54 656 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 TMEM239Q8WW34 195 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 SGCDQ92629 289 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 RASD2Q96D21 266 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 RASSF4Q9H2L5 321 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 TMEM100Q9NV29 134 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 NECAP2Q9NVZ3 263 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 CTSZQ9UBR2 303 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 VPREB3Q9UKI3 123 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 DOCK11Q5JSL3 2073 aa10.52□□□□□ -0.73
SS18-219ENST00000581570 J3QW42 95 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 FPR3P25089 353 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 GATA4P43694 442 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 RGS6P49758 472 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 CTXN1P60606 82 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 KCNJ8Q15842 424 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 CYP51A1Q16850 503 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 BHLHE23Q8NDY6 225 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 Q8TCH9 128 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 ERGIC1Q969X5 290 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 CPPED1Q9BRF8 314 aaPredicted RBP10.51□□□□□ -0.73
SS18-219ENST00000581570 CENPHQ9H3R5 247 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 AURKAIP1Q9NWT8 199 aaPredicted RBP10.51□□□□□ -0.73
SS18-219ENST00000581570 CCDC167Q9P0B6 97 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 FBLN5Q9UBX5 448 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 HIF3AQ9Y2N7 669 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 CAB39Q9Y376 341 aaPredicted RBP10.51□□□□□ -0.73
SS18-219ENST00000581570 USH1CQ9Y6N9 552 aa10.51□□□□□ -0.73
SS18-219ENST00000581570 ELOVL7A1L3X0 281 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 ANKRD61A6NGH8 418 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 A6NIZ1 184 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 IQCF6A8MYZ5 107 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 FBP2O00757 339 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 ADAM20O43506 726 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 FAM20BO75063 409 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 HLA-DPB1P04440 258 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 FBP1P09467 338 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 GABRA5P31644 462 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 MRPL19P49406 292 aaKnown RBP10.5□□□□□ -0.73
SS18-219ENST00000581570 WDR4P57081 412 aaKnown RBP10.5□□□□□ -0.73
SS18-219ENST00000581570 TAS2R41P59536 307 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 RAP1BP61224 184 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 VSNL1P62760 191 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 RAP1AP62834 184 aa10.5□□□□□ -0.73
SS18-219ENST00000581570 MAB21L1Q13394 359 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms