RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TAF9Q16594 264 aa2.93□□□□□ -1.94
SS18-214ENST00000580003 GPR107Q5VW38 600 aa2.93□□□□□ -1.94
SS18-214ENST00000580003 ADNP2Q6IQ32 1131 aa2.93□□□□□ -1.94
SS18-214ENST00000580003 SASS6Q6UVJ0 657 aa2.93□□□□□ -1.94
SS18-214ENST00000580003 CHST4Q8NCG5 386 aa2.93□□□□□ -1.94
SS18-214ENST00000580003 DUS3LQ96G46 650 aaKnown RBP2.93□□□□□ -1.94
SS18-214ENST00000580003 RBBP8Q99708 897 aa2.93□□□□□ -1.94
SS18-214ENST00000580003 HRASLS2Q9NWW9 162 aa2.93□□□□□ -1.94
SS18-214ENST00000580003 LGALS13Q9UHV8 139 aa2.93□□□□□ -1.94
SS18-214ENST00000580003 ZNF229Q9UJW7 825 aa2.93□□□□□ -1.94
SS18-214ENST00000580003 UBIAD1Q9Y5Z9 338 aa2.93□□□□□ -1.94
SS18-214ENST00000580003 AKNAQ7Z591 1439 aa2.93□□□□□ -1.94
SS18-214ENST00000580003 PALLDQ8WX93 1383 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 IGHV3OR16-8A0A075B7F1 116 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 IGHV7-4-1A0A0J9YVY3 117 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 PALMO75781 387 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 TSPAN13O95857 204 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 ANXA5P08758 320 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 TNFSF9P41273 254 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 ACLYP53396 1101 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 STXBP1P61764 594 aaKnown RBP2.92□□□□□ -1.94
SS18-214ENST00000580003 TGM3Q08188 693 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 ZNF726P1Q15940 193 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 SPIN3Q5JUX0 258 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 UBE2UQ5VVX9 321 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 SPANXA2-OT1Q8N9U9 137 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 KCNG3Q8TAE7 436 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 KIFAP3Q92845 792 aa2.92□□□□□ -1.94
SS18-214ENST00000580003 TMEM120BA0PK00 339 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 VGLL3A8MV65 326 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 BTNL10A8MVZ5 291 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 NVLO15381 856 aaKnown RBP2.91□□□□□ -1.94
SS18-214ENST00000580003 EIF4E2O60573 245 aaKnown RBP2.91□□□□□ -1.94
SS18-214ENST00000580003 EIF1BO60739 113 aaKnown RBP2.91□□□□□ -1.94
SS18-214ENST00000580003 IGLV3-25P01717 112 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 EIF1P41567 113 aaKnown RBP2.91□□□□□ -1.94
SS18-214ENST00000580003 GDI2P50395 445 aaKnown RBP2.91□□□□□ -1.94
SS18-214ENST00000580003 PPM1LQ5SGD2 360 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 CASP12Q6UXS9 341 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 MBOAT1Q6ZNC8 495 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 NKAIN4Q8IVV8 208 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 OR13C2Q8NGS9 318 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 GGTLC1Q9BX51 225 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 LHX5Q9H2C1 402 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 C21orf62Q9NYP8 219 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 COX16Q9P0S2 106 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 DHCR7Q9UBM7 475 aaKnown RBP2.91□□□□□ -1.94
SS18-214ENST00000580003 EXTL2Q9UBQ6 330 aa2.91□□□□□ -1.94
SS18-214ENST00000580003 SMCO2A6NFE2 343 aa2.9□□□□□ -1.95
SS18-214ENST00000580003 CD37P11049 281 aa2.9□□□□□ -1.95
SS18-214ENST00000580003 COL8A2P25067 703 aa2.9□□□□□ -1.95
SS18-214ENST00000580003 U2AF2P26368 475 aaKnown RBP eCLIP2.9□□□□□ -1.95
SS18-214ENST00000580003 PRR3P79522 188 aaKnown RBP2.9□□□□□ -1.95
SS18-214ENST00000580003 FAM222AQ5U5X8 452 aa2.9□□□□□ -1.95
SS18-214ENST00000580003 NANOGNBQ7Z5D8 188 aa2.9□□□□□ -1.95
SS18-214ENST00000580003 MRPL55Q7Z7F7 128 aaKnown RBP2.9□□□□□ -1.95
SS18-214ENST00000580003 NPWQ8N729 165 aa2.9□□□□□ -1.95
SS18-214ENST00000580003 OR11H7Q8NGC8 314 aa2.9□□□□□ -1.95
SS18-214ENST00000580003 EEF1AKMT3Q96AZ1 226 aa2.9□□□□□ -1.95
SS18-214ENST00000580003 OR51M1Q9H341 326 aa2.9□□□□□ -1.95
SS18-214ENST00000580003 ZNF586Q9NXT0 402 aa2.9□□□□□ -1.95
SS18-214ENST00000580003 PISDQ9UG56 409 aa2.9□□□□□ -1.95
SS18-214ENST00000580003 CARHSP1Q9Y2V2 147 aaKnown RBP2.9□□□□□ -1.95
SS18-214ENST00000580003 H7C417 338 aa2.89□□□□□ -1.95
SS18-214ENST00000580003 CYB5R3P00387 301 aaPredicted RBP2.89□□□□□ -1.95
SS18-214ENST00000580003 PAHP00439 452 aa2.89□□□□□ -1.95
SS18-214ENST00000580003 IGHV3-11P01762 117 aa2.89□□□□□ -1.95
SS18-214ENST00000580003 ATF6P18850 670 aa2.89□□□□□ -1.95
SS18-214ENST00000580003 LOXP28300 417 aaPredicted RBP2.89□□□□□ -1.95
SS18-214ENST00000580003 RPL23P62829 140 aaKnown RBP2.89□□□□□ -1.95
SS18-214ENST00000580003 DDX39BQ13838 428 aaKnown RBP2.89□□□□□ -1.95
SS18-214ENST00000580003 YIF1BQ5BJH7 314 aa2.89□□□□□ -1.95
SS18-214ENST00000580003 H3F3CQ6NXT2 135 aa2.89□□□□□ -1.95
SS18-214ENST00000580003 CSGALNACT2Q8N6G5 542 aa2.89□□□□□ -1.95
SS18-214ENST00000580003 FBXO32Q969P5 355 aa2.89□□□□□ -1.95
SS18-214ENST00000580003 RACGAP1Q9H0H5 632 aa2.89□□□□□ -1.95
SS18-214ENST00000580003 MTFP1Q9UDX5 166 aa2.89□□□□□ -1.95
SS18-214ENST00000580003 ZNF391Q9UJN7 358 aa2.89□□□□□ -1.95
SS18-214ENST00000580003 SHROOM3Q8TF72 1996 aa2.89□□□□□ -1.95
SS18-214ENST00000580003 GABRR3A8MPY1 467 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 KRBOX1C9JBD0 128 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 SMKR1H3BMG3 65 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 CHMP2AO43633 222 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 ARG1P05089 322 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 PSMB5P28074 263 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 RBM34P42696 430 aaKnown RBP2.88□□□□□ -1.95
SS18-214ENST00000580003 PRLHRP49683 370 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 GFERP55789 205 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 RPS23P62266 143 aaKnown RBP2.88□□□□□ -1.95
SS18-214ENST00000580003 RPS11P62280 158 aaKnown RBP eCLIP2.88□□□□□ -1.95
SS18-214ENST00000580003 BAMBIQ13145 260 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 TEX30Q5JUR7 227 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 C1orf64Q8NEQ6 169 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 OR5M1Q8NGP8 315 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 TVP23CQ96ET8 276 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 IP6K3Q96PC2 410 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 CENPKQ9BS16 269 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 PKIBQ9C010 78 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 METTL7AQ9H8H3 244 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 RHBDL2Q9NX52 303 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms