RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 IL20RAQ9UHF4 553 aa17.67■□□□□ 0.42
VPS53-216ENST00000574029 SLC9A3R2Q15599 337 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 OTPQ5XKR4 325 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 SLC27A4Q6P1M0 643 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 C1orf94Q6P1W5 598 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 FBXW12Q6X9E4 464 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 HACD2Q6Y1H2 254 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 OR5AS1Q8N127 324 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 ATG16L2Q8NAA4 619 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 OR52E2Q8NGJ4 325 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 SLC25A28Q96A46 364 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 CCT8L2Q96SF2 557 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 HOPXQ9BPY8 73 aaPredicted RBP17.66■□□□□ 0.42
VPS53-216ENST00000574029 SSBP3Q9BWW4 388 aaPredicted RBP17.66■□□□□ 0.42
VPS53-216ENST00000574029 TMEM165Q9HC07 324 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 CMTM6Q9NX76 183 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 GMPR2Q9P2T1 348 aaKnown RBP17.66■□□□□ 0.42
VPS53-216ENST00000574029 ATPIF1Q9UII2 106 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 COA3Q9Y2R0 106 aaPredicted RBP17.66■□□□□ 0.42
VPS53-216ENST00000574029 AP3M1Q9Y2T2 418 aa17.66■□□□□ 0.42
VPS53-216ENST00000574029 KHDRBS3O75525 346 aaKnown RBP17.65■□□□□ 0.42
VPS53-216ENST00000574029 IGHV4-38-2P0DP08 117 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 RGS6P49758 472 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 IL13RA1P78552 427 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 HLXQ14774 488 aaPredicted RBP17.65■□□□□ 0.42
VPS53-216ENST00000574029 IFI44LQ53G44 452 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 C8orf82Q6P1X6 216 aaPredicted RBP17.65■□□□□ 0.42
VPS53-216ENST00000574029 LRRN1Q6UXK5 716 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 GLB1L2Q8IW92 636 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 PARP8Q8N3A8 854 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 OR8G5Q8NG78 346 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 ZNF420Q8TAQ5 688 aaPredicted RBP17.65■□□□□ 0.42
VPS53-216ENST00000574029 DACT3Q96B18 629 aaPredicted RBP17.65■□□□□ 0.42
VPS53-216ENST00000574029 UPRTQ96BW1 309 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 RASD2Q96D21 266 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 MEGF10Q96KG7 1140 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 NDEL1Q9GZM8 345 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 SYT4Q9H2B2 425 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 NMNAT1Q9HAN9 279 aaPredicted RBP17.65■□□□□ 0.42
VPS53-216ENST00000574029 PTTG3PQ9NZH4 202 aa17.65■□□□□ 0.42
VPS53-216ENST00000574029 VSX1Q9NZR4 365 aaPredicted RBP17.65■□□□□ 0.42
VPS53-216ENST00000574029 POM121CA8CG34 1229 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 SLC16A7O60669 478 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 PTP4A3O75365 173 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 FSTL3O95633 263 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 ZNF682O95780 498 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 FAM107AO95990 144 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 PLATP00750 562 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 DBHP09172 617 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 SDHAP31040 664 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 MTNR1AP48039 350 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 KRR1Q13601 381 aaKnown RBP17.64■□□□□ 0.41
VPS53-216ENST00000574029 KCNMB1Q16558 191 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 LEG1Q6P5S2 330 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 BTNL3Q6UXE8 466 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 CBLL1Q75N03 491 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 ARPINQ7Z6K5 226 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 KLBQ86Z14 1044 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 SLC15A3Q8IY34 581 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 OR10AD1Q8NGE0 317 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 OR5L1Q8NGL2 311 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 OR13G1Q8NGZ3 307 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 GPX7Q96SL4 187 aaPredicted RBP17.64■□□□□ 0.41
VPS53-216ENST00000574029 ANKRD19PQ9H560 264 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 NRIP3Q9NQ35 241 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 MIOXQ9UGB7 285 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 TMEM5Q9Y2B1 443 aa17.64■□□□□ 0.41
VPS53-216ENST00000574029 IGHV2-70DA0A0C4DH43 119 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 H0YL77 283 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 CXCR6O00574 342 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 RER1O15258 196 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 DCTN3O75935 186 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 NDUFB2O95178 105 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 CYB5R3P00387 301 aaPredicted RBP17.63■□□□□ 0.41
VPS53-216ENST00000574029 RPS2P15880 293 aaKnown RBP17.63■□□□□ 0.41
VPS53-216ENST00000574029 SRP9P49458 86 aaKnown RBP17.63■□□□□ 0.41
VPS53-216ENST00000574029 ZNF181Q2M3W8 571 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 GPR139Q6DWJ6 353 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 OR2T2Q6IF00 324 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 RRM2BQ7LG56 351 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 TSEN54Q7Z6J9 526 aaKnown RBP17.63■□□□□ 0.41
VPS53-216ENST00000574029 SLC7A13Q8TCU3 470 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 RAB40AQ8WXH6 277 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 APOBEC3DQ96AK3 386 aaPredicted RBP17.63■□□□□ 0.41
VPS53-216ENST00000574029 FAM46AQ96IP4 442 aaKnown RBP17.63■□□□□ 0.41
VPS53-216ENST00000574029 ZNF582Q96NG8 517 aaPredicted RBP17.63■□□□□ 0.41
VPS53-216ENST00000574029 SLC30A2Q9BRI3 323 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 RERGLQ9H628 205 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 SIGLEC7Q9Y286 467 aa17.63■□□□□ 0.41
VPS53-216ENST00000574029 SOX21Q9Y651 276 aaPredicted RBP17.63■□□□□ 0.41
VPS53-216ENST00000574029 PKD1L1Q8TDX9 2849 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 IGHV3OR16-10A0A075B7F0 116 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 IMPA2O14732 288 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 MLNRO43193 412 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 ZNF205O95201 554 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 GNB2P62879 340 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 HIST1H3AP68431 136 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 LIPEQ05469 1076 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 HIST2H3PS2Q5TEC6 136 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 HIST2H3AQ71DI3 136 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms