RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SNX33Q8WV41 574 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 CDADC1Q9BWV3 514 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 NMNAT2Q9BZQ4 307 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 NTN4Q9HB63 628 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 NKIRAS2Q9NYR9 191 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 DNAJB9Q9UBS3 223 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 CYB5R1Q9UHQ9 305 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 BAIAP2Q9UQB8 552 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 TVP23AA6NH52 213 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 ZSCAN5BA6NJL1 495 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 CDC14BO60729 498 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 CRLF1O75462 422 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 ATP5HO75947 161 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 IGHV1-46P01743 117 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 TACSTD2P09758 323 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 PSKH1P11801 424 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 ZNF23P17027 643 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 ZNF81P51508 661 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 MRPS11P82912 194 aaKnown RBP12.8□□□□□ -0.36
VPS39-210ENST00000568357 TSTQ16762 297 aaKnown RBP12.8□□□□□ -0.36
VPS39-210ENST00000568357 PCGF3Q3KNV8 242 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 KRTAP27-1Q3LI81 207 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 C6orf52Q5T4I8 152 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 LYPD4Q6UWN0 246 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 IQCF1Q8N6M8 205 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 PROKR2Q8NFJ6 384 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 OR2T4Q8NH00 348 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 CMBLQ96DG6 245 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 COQ7Q99807 217 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 SOX7Q9BT81 388 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 YY1AP1Q9H869 796 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 CHODLQ9H9P2 273 aa12.8□□□□□ -0.36
VPS39-210ENST00000568357 PNRC2Q9NPJ4 139 aaKnown RBP12.8□□□□□ -0.36
VPS39-210ENST00000568357 A8MV72 311 aaPredicted RBP12.79□□□□□ -0.36
VPS39-210ENST00000568357 H3BSA7 217 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 SPRY3O43610 288 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 E2F6O75461 281 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 TIPRLO75663 272 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 RP2O75695 350 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 MT-ND5P03915 603 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 GYPBP06028 91 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 CLUP10909 449 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 ACHEP22303 614 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 TUBG1P23258 451 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 IL2RGP31785 369 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 RPS27P42677 84 aaKnown RBP12.79□□□□□ -0.36
VPS39-210ENST00000568357 RASSF2P50749 326 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 SLC25A1P53007 311 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 HLXQ14774 488 aaPredicted RBP12.79□□□□□ -0.36
VPS39-210ENST00000568357 SPRNQ5BIV9 151 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 ACSM5Q6NUN0 579 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 OR2AJ1Q8NGZ0 328 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 MSI2Q96DH6 328 aaKnown RBP12.79□□□□□ -0.36
VPS39-210ENST00000568357 MAP6Q96JE9 813 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 DCLRE1CQ96SD1 692 aaKnown RBP12.79□□□□□ -0.36
VPS39-210ENST00000568357 PITX2Q99697 317 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 HCAR1Q9BXC0 346 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 HDHD2Q9H0R4 259 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 WDR76Q9H967 626 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 MSL2Q9HCI7 577 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 TUBG2Q9NRH3 451 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 ZNF275Q9NSD4 429 aaPredicted RBP12.79□□□□□ -0.36
VPS39-210ENST00000568357 ATPIF1Q9UII2 106 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 ANK2Q01484 3957 aa12.79□□□□□ -0.36
VPS39-210ENST00000568357 ABCA1O95477 2261 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 PLSCR5A0PG75 271 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 H3BN98 237 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 WNT9BO14905 357 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 ZNF823P16415 610 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 SPI1P17947 270 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 POU1F1P28069 291 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 LIPAP38571 399 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 CRYBB2P43320 205 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 TMEM33P57088 247 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 GINS1Q14691 196 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 NAA40Q86UY6 237 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 ZNF511Q8NB15 262 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 OR10S1Q8NGN2 331 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 TEX47Q8TBZ9 253 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 PTP4A1Q93096 173 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 UTP4Q969X6 686 aaKnown RBP12.78□□□□□ -0.36
VPS39-210ENST00000568357 HAVCR1Q96D42 359 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 MMADHCQ9H3L0 296 aaPredicted RBP12.78□□□□□ -0.36
VPS39-210ENST00000568357 MED20Q9H944 212 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 CMC2Q9NRP2 79 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 CYSLTR2Q9NS75 346 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 DECR2Q9NUI1 292 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 PURGQ9UJV8 347 aaKnown RBP12.78□□□□□ -0.36
VPS39-210ENST00000568357 CACNG2Q9Y698 323 aa12.78□□□□□ -0.36
VPS39-210ENST00000568357 FAM183AA6NL82 134 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 RIIAD1A6NNX1 92 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 F5H5K5 113 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 TIMM8AO60220 97 aaPredicted RBP12.77□□□□□ -0.37
VPS39-210ENST00000568357 IFNGP01579 166 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 OSMP13725 252 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 ANXA8P13928 327 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 ZNF16P17020 682 aaPredicted RBP12.77□□□□□ -0.37
VPS39-210ENST00000568357 KITLGP21583 273 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 GRK5P34947 590 aa12.77□□□□□ -0.37
VPS39-210ENST00000568357 GPR6P46095 362 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms