RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 ZNF629Q9UEG4 869 aaPredicted RBP12.52□□□□□ -0.4
VPS9D1-202ENST00000561976 CSAG2Q9Y5P2 127 aa12.52□□□□□ -0.4
VPS9D1-202ENST00000561976 COL4A2P08572 1712 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 OR5K4A6NMS3 321 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 B4DGG1 531 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 NUDT21O43809 227 aaKnown RBP12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 TPT1P13693 172 aaKnown RBP12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 HRH1P35367 487 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 ZDHHC22Q8N966 263 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 LILRB1Q8NHL6 650 aaPredicted RBP12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 NRSN2Q9GZP1 204 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 TREM1Q9NP99 234 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 SLC2A8Q9NY64 477 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 OR52A1Q9UKL2 312 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 MKL2Q9ULH7 1088 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 KCNK7Q9Y2U2 307 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 R4GMQ9 66 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 ARPC4-TTLL3A0A0A6YYG9 625 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 A0A0B4J2A0 478 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 GP1BBP13224 206 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 ZNF823P16415 610 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 HLA-GP17693 338 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 ADCYAP1P18509 176 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 PSMB6P28072 239 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 IL12BP29460 328 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 GNALP38405 381 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 ARRB1P49407 418 aaPredicted RBP12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 SLC37A1P57057 533 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 GLO1Q04760 184 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 AIMP2Q13155 320 aaKnown RBP12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 SERTAD2Q14140 314 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 SGCBQ16585 318 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 KIF26BQ2KJY2 2108 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 HFEQ30201 348 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 ZNF260Q3ZCT1 412 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 RAB11FIP2Q7L804 512 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 NUP54Q7Z3B4 507 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 ARMC10Q8N2F6 343 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 ZNF519Q8TB69 540 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 AQP3Q92482 292 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 ARL11Q969Q4 196 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 PIK3IP1Q96FE7 263 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 MAP3K3Q99759 626 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 TXNIPQ9H3M7 391 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 SHPKQ9UHJ6 478 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 RAB22AQ9UL26 194 aa12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 TMEM184BQ9Y519 407 aaPredicted RBP12.52□□□□□ -0.41
VPS9D1-202ENST00000561976 P2RY10O00398 339 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 WISP1O95388 367 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 IL2RAP01589 272 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 CA3P07451 260 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 RORAP35398 523 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 SERPINF1P36955 418 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 ZP2Q05996 745 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 H3F3CQ6NXT2 135 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 LINC00346Q8IVM7 164 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 MRGPRFQ96AM1 343 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 SELENOIQ9C0D9 397 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 CNTD2Q9H8S5 307 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 CENPMQ9NSP4 180 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 KLF2Q9Y5W3 355 aaPredicted RBP12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 TMEM269A0A1B0GVZ9 245 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 RAB27BO00194 218 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 ACTL6AO96019 429 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 F12P00748 615 aaPredicted RBP12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 C1orf100Q5SVJ3 147 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 PHF19Q5T6S3 580 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 DCXRQ7Z4W1 244 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 SLC22A18ASQ8N1D0 253 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 KDM8Q8N371 416 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 PTPMT1Q8WUK0 201 aaPredicted RBP12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 TMED6Q8WW62 240 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 CNTNAP3BQ96NU0 1288 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 TMEM231Q9H6L2 316 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 VSX1Q9NZR4 365 aaPredicted RBP12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 ATPIF1Q9UII2 106 aa12.51□□□□□ -0.41
VPS9D1-202ENST00000561976 CPED1A4D0V7 1026 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 OR6C76A6NM76 312 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 MT-ATP6P00846 226 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 PMP2P02689 132 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 CRHP06850 196 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 HOXA1P49639 335 aaPredicted RBP12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 SRSF3P84103 164 aaKnown RBP12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 PLEKHN1Q494U1 663 aaPredicted RBP12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 NKAPLQ5M9Q1 402 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 ZNF813Q6ZN06 617 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 ZNF704Q6ZNC4 412 aaPredicted RBP12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 TMEM151BQ8IW70 566 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 NKAIN3Q8N8D7 197 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 RNF141Q8WVD5 230 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 PTX4Q96A99 478 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 FGGYQ96C11 551 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 SLC46A1Q96NT5 459 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 C12orf57Q99622 126 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 TBL1XR1Q9BZK7 514 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 FREM3P0C091 2139 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 WIPF3A6NGB9 483 aa12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 SOX1O00570 391 aaPredicted RBP12.5□□□□□ -0.41
VPS9D1-202ENST00000561976 EFSO43281 561 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms