RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 POP5Q969H6 163 aaKnown RBP13.32□□□□□ -0.28
VPS39-203ENST00000561797 CHID1Q9BWS9 393 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 TSSK6Q9BXA6 273 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 CYSLTR2Q9NS75 346 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 PTTG3PQ9NZH4 202 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 LPAR3Q9UBY5 353 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 KLHL21Q9UJP4 597 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 PURGQ9UJV8 347 aaKnown RBP13.32□□□□□ -0.28
VPS39-203ENST00000561797 CACNG2Q9Y698 323 aa13.32□□□□□ -0.28
VPS39-203ENST00000561797 IFNA2P01563 188 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 FAM157CP0CG43 387 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 CDH15P55291 814 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 COX10Q12887 443 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 HFEQ30201 348 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 SPRNQ5BIV9 151 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 FAM209AQ5JX71 171 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 FAM120AOSQ5T036 256 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 CFAP77Q6ZQR2 320 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 ADGRG5Q8IZF4 528 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 OR10G2Q8NGC3 310 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 CANT1Q8WVQ1 401 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 ELMOD3Q96FG2 381 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 PITX2Q99697 317 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 MDFIQ99750 246 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 EGLN1Q9GZT9 426 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 HDHD2Q9H0R4 259 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 ARMC1Q9NVT9 282 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 CGGBP1Q9UFW8 167 aaPredicted RBP13.31□□□□□ -0.28
VPS39-203ENST00000561797 ATPIF1Q9UII2 106 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 ZDHHC8Q9ULC8 765 aa13.31□□□□□ -0.28
VPS39-203ENST00000561797 TVP23AA6NH52 213 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 AQP12BA6NM10 295 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 GNGT2O14610 69 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 ZNF823P16415 610 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 TUBG1P23258 451 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 RGS6P49758 472 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 ERFP50548 548 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 HLXQ14774 488 aaPredicted RBP13.3□□□□□ -0.28
VPS39-203ENST00000561797 CR1LQ2VPA4 569 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 DNAL1Q4LDG9 190 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 ZMAT1Q5H9K5 638 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 ZNF362Q5T0B9 420 aaPredicted RBP13.3□□□□□ -0.28
VPS39-203ENST00000561797 SLC18B1Q6NT16 456 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 AQP12AQ8IXF9 295 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 OR5AS1Q8N127 324 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 LNX2Q8N448 690 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 SLC37A3Q8NCC5 494 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 PROKR2Q8NFJ6 384 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 OR51L1Q8NGJ5 315 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 OR9Q1Q8NGQ5 310 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 OR2T4Q8NH00 348 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 OR4Q3Q8NH05 313 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 GIPC3Q8TF64 312 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 ZNRF4Q8WWF5 429 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 CCL17Q92583 94 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 PTP4A1Q93096 173 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 HAVCR1Q96D42 359 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 COG8Q96MW5 612 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 DCLRE1CQ96SD1 692 aaKnown RBP13.3□□□□□ -0.28
VPS39-203ENST00000561797 DDOQ99489 341 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 COQ7Q99807 217 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 NIPSNAP1Q9BPW8 284 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 DGCR6LQ9BY27 220 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 LPAR2Q9HBW0 351 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 TUBG2Q9NRH3 451 aa13.3□□□□□ -0.28
VPS39-203ENST00000561797 MRPL22Q9NWU5 206 aaKnown RBP13.3□□□□□ -0.28
VPS39-203ENST00000561797 ARHGAP32A7KAX9 2087 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 DHRS12A0PJE2 317 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 FAM157AC9JC47 383 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 CLDN25C9JDP6 229 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 ADH4P08319 380 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 KITLGP21583 273 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 GGT2P36268 569 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 RPS27P42677 84 aaKnown RBP13.29□□□□□ -0.28
VPS39-203ENST00000561797 TNFAIP6P98066 277 aaPredicted RBP13.29□□□□□ -0.28
VPS39-203ENST00000561797 HNRNPA0Q13151 305 aaKnown RBP13.29□□□□□ -0.28
VPS39-203ENST00000561797 CDK5R2Q13319 367 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 FLOT2Q14254 428 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 RSPO1Q2MKA7 263 aaPredicted RBP13.29□□□□□ -0.28
VPS39-203ENST00000561797 LYPD4Q6UWN0 246 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 Q6ZR03 302 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 TMEM179BQ7Z7N9 219 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 SPATA24Q86W54 205 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 OR2Z1Q8NG97 314 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 OR5L1Q8NGL2 311 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 APOBEC3DQ96AK3 386 aaPredicted RBP13.29□□□□□ -0.28
VPS39-203ENST00000561797 SLC7A6OSQ96CW6 309 aaPredicted RBP13.29□□□□□ -0.28
VPS39-203ENST00000561797 C1orf159Q96HA4 380 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 DIRC2Q96SL1 478 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 FEVQ99581 238 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 CYB5R1Q9UHQ9 305 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 BAIAP2Q9UQB8 552 aa13.29□□□□□ -0.28
VPS39-203ENST00000561797 B4DSR2 109 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 F5H5K5 113 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 GYPBP06028 91 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 RAC2P15153 192 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 SRD5A1P18405 259 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 HNF1AP20823 631 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 RBMXP38159 391 aaKnown RBP13.28□□□□□ -0.28
VPS39-203ENST00000561797 LMO4P61968 165 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms