RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SNRPBP14678 240 aaKnown RBP4.82□□□□□ -1.64
VPS13C-209ENST00000560637 RAB3BP20337 219 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 LCN1P31025 176 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 FOXG1P55316 489 aaPredicted RBP4.82□□□□□ -1.64
VPS13C-209ENST00000560637 PSPHP78330 225 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 KLRB1Q12918 225 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF239Q16600 458 aaKnown RBP4.82□□□□□ -1.64
VPS13C-209ENST00000560637 TBC1D28Q2M2D7 210 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 GLT8D1Q68CQ7 371 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 CREB3L2Q70SY1 520 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 SLC16A9Q7RTY1 509 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 DTX1Q86Y01 620 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 DND1Q8IYX4 353 aaKnown RBP4.82□□□□□ -1.64
VPS13C-209ENST00000560637 GATA6Q92908 595 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 MUL1Q969V5 352 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 WACQ9BTA9 647 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 HMG20AQ9NP66 347 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 KCNJ16Q9NPI9 418 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 NRIP3Q9NQ35 241 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 EXTL2Q9UBQ6 330 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 REV1Q9UBZ9 1251 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 ITGB1BP2Q9UKP3 347 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 COPS3Q9UNS2 423 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 SPEF1Q9Y4P9 236 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 FAM221AA4D161 298 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 LRRC3CA6NJW4 275 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 GABRPO00591 440 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 CTDSP2O14595 271 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 EFNA2O43921 213 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 FZD7O75084 574 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 IRF2P14316 349 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 SNTB2Q13425 540 aaKnown RBP4.82□□□□□ -1.64
VPS13C-209ENST00000560637 EDDM3AQ14507 147 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 FAM205BPQ63HN1 556 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 USP43Q70EL4 1123 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 SSX6Q7RTT6 188 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 TRAPPC6BQ86SZ2 158 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 NAA40Q86UY6 237 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF227Q86WZ6 799 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 OR10AD1Q8NGE0 317 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 IL1F10Q8WWZ1 152 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 RNF170Q96K19 258 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 YTHDF1Q9BYJ9 559 aaKnown RBP4.82□□□□□ -1.64
VPS13C-209ENST00000560637 IFT46Q9NQC8 304 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 PCDHB10Q9UN67 800 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 TIMM10BQ9Y5J6 103 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 FLVCR1Q9Y5Y0 555 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 HSPE1-MOB4S4R3N1 261 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 TMEM131Q92545 1883 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 MTORP42345 2549 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 TRAV18A0A075B6X5 111 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 NKX2-6A6NCS4 301 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 AQP7P3A6NL99 342 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 NPIPB9F8W1W9 429 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 KLF4O43474 513 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 RGS9O75916 674 aaPredicted RBP4.82□□□□□ -1.64
VPS13C-209ENST00000560637 ACTL6AO96019 429 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 CLPSP04118 112 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 OR3A3P47888 321 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 OR3A2P47893 321 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 HMGA2P52926 109 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 SLC35A2P78381 396 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 TLE1Q04724 770 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 FOXF2Q12947 444 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 GPR50Q13585 617 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 CMPK2Q5EBM0 449 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 TMEM81Q6P7N7 255 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 NPEPL1Q8NDH3 523 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 ZDHHC16Q969W1 377 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF524Q96C55 264 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 CNTNAP3BQ96NU0 1288 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 TAAR6Q96RI8 345 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 AMELYQ99218 206 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 GABARAPL3Q9BY60 117 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 CNTNAP3Q9BZ76 1288 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF696Q9H7X3 374 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 MSL2Q9HCI7 577 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 NGBQ9NPG2 151 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 RHBDL2Q9NX52 303 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 NTMQ9P121 344 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 NUFIP1Q9UHK0 495 aaKnown RBP4.82□□□□□ -1.64
VPS13C-209ENST00000560637 CAB39Q9Y376 341 aaPredicted RBP4.82□□□□□ -1.64
VPS13C-209ENST00000560637 LRP12Q9Y561 859 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 USP9XQ93008 2570 aaPredicted RBP4.82□□□□□ -1.64
VPS13C-209ENST00000560637 DSPPQ9NZW4 1301 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 FRYQ5TBA9 3013 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 HECTD1Q9ULT8 2610 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 IGKV1D-43A0A0B4J1Z2 117 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 TUBAL3A6NHL2 446 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 CENPXA8MT69 81 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 H0YJX3 145 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 PDCD5O14737 125 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 GABRA1P14867 456 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 CFL1P23528 166 aaKnown RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 MAPK3P27361 379 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 LIMK1P53667 647 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 SH3BGRP55822 239 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 CDK5Q00535 292 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ALKBH1Q13686 389 aaKnown RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 HLXQ14774 488 aaPredicted RBP4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms