RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 ELFN2Q5R3F8 820 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 SPATA46Q5T0L3 261 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 LIPNQ5VXI9 398 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 MBNL2Q5VZF2 373 aaKnown RBP6.26□□□□□ -1.41
SCFD1-222ENST00000556768 ZNF774Q6NX45 483 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 PIGWQ7Z7B1 504 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 ARHGAP24Q8N264 748 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 TEX29Q8N6K0 151 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 GJC3Q8NFK1 279 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 SPATA3Q8NHX4 192 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 IPCEF1Q8WWN9 437 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-222ENST00000556768 CCL17Q92583 94 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 RAB1CQ92928 201 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 ELMOD3Q96FG2 381 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 ERMAPQ96PL5 475 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-222ENST00000556768 OR2J1Q9GZK6 312 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 TBCCD1Q9NVR7 557 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 MYEF2Q9P2K5 600 aaKnown RBP6.26□□□□□ -1.41
SCFD1-222ENST00000556768 IL20RAQ9UHF4 553 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 GRIP1Q9Y3R0 1128 aa6.26□□□□□ -1.41
SCFD1-222ENST00000556768 CUBNO60494 3623 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 TRBV4-1A0A0J9YWV2 114 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 RNF212BA8MTL3 300 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 CLDN25C9JDP6 229 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 IMPA2O14732 288 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 ARPC2O15144 300 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 SURF4O15260 269 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 SPRY3O43610 288 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 IDH3BO43837 385 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 TIMM8AO60220 97 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-222ENST00000556768 THBS2P35442 1172 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 MSX2P35548 267 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-222ENST00000556768 MAGEB1P43366 347 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 ERVS71-1P61550 626 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 FHL1Q13642 323 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 TSTQ16762 297 aaKnown RBP6.25□□□□□ -1.41
SCFD1-222ENST00000556768 MSMPQ1L6U9 139 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 RFX4Q33E94 735 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 MESTQ5EB52 335 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 MTX3Q5HYI7 312 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 RPL13AP3Q6NVV1 102 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 FOXL2NBQ6ZUU3 175 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 FAM122BQ7Z309 247 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 GLCCI1Q86VQ1 547 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 ZNF101Q8IZC7 436 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 NPEPL1Q8NDH3 523 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 OR52L1Q8NGH7 329 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 SLC25A40Q8TBP6 338 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 FANK1Q8TC84 345 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 RASD2Q96D21 266 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 RAB39BQ96DA2 213 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 MARS2Q96GW9 593 aaKnown RBP6.25□□□□□ -1.41
SCFD1-222ENST00000556768 NSL1Q96IY1 281 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 GPX7Q96SL4 187 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-222ENST00000556768 IFT27Q9BW83 186 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 NUAK2Q9H093 628 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 WNT5BQ9H1J7 359 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 NARFLQ9H6Q4 476 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 ZNF275Q9NSD4 429 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-222ENST00000556768 ASH2LQ9UBL3 628 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 CD300AQ9UGN4 299 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 COA3Q9Y2R0 106 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-222ENST00000556768 ANK3Q12955 4377 aaKnown RBP6.25□□□□□ -1.41
SCFD1-222ENST00000556768 OR6C6A6NF89 314 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 FAM229AH3BQW9 127 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 HLA-DQA2P01906 255 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 IGFBP1P08833 259 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-222ENST00000556768 CTLA4P16410 223 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 TNFRSF1AP19438 455 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 FUT4P22083 530 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 IGFBP5P24593 272 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 FPR3P25089 353 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 WNT5AP41221 380 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 LIMS1P48059 325 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 RGS6P49758 472 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 SEC23BQ15437 767 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 TRIP10Q15642 601 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 CR1LQ2VPA4 569 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 SLC36A3Q495N2 470 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 ACSM5Q6NUN0 579 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 C1orf94Q6P1W5 598 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 SHQ1Q6PI26 577 aaKnown RBP6.25□□□□□ -1.41
SCFD1-222ENST00000556768 SHISA2Q6UWI4 295 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 LYPD4Q6UWN0 246 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 USP51Q70EK9 711 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 CXXC5Q7LFL8 322 aaKnown RBP6.25□□□□□ -1.41
SCFD1-222ENST00000556768 DHFR2Q86XF0 187 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 ZDHHC21Q8IVQ6 265 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 FAM86B1Q8N7N1 296 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 ZBTB34Q8NCN2 500 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 CCDC197Q8NCU1 140 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 OR2AJ1Q8NGZ0 328 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 OR51F2Q8NH61 342 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 GNPDA2Q8TDQ7 276 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 PTP4A1Q93096 173 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 CCT8L2Q96SF2 557 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 JAM3Q9BX67 310 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 OR52D1Q9H346 318 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 MUC13Q9H3R2 512 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 AP5S1Q9NUS5 200 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms