RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 GNRHR2Q96P88 292 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 LAT2Q9GZY6 243 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 TAS2R5Q9NYW4 299 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 TRAV1-2A0A0B4J238 106 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 E9PQ18 207 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 F8W036 122 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 KLF4O43474 513 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 GNB3P16520 340 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 RAB3AP20336 220 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 NPY4RP50391 375 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 CSNK2A1P68400 391 aaPredicted RBP13.36□□□□□ -0.27
CUX1-215ENST00000556210 BLOC1S1P78537 153 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 RIN1Q13671 783 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 HLXQ14774 488 aaPredicted RBP13.36□□□□□ -0.27
CUX1-215ENST00000556210 TMEM244Q5VVB8 128 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 PWWP2BQ6NUJ5 590 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 CSNK2A3Q8NEV1 391 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 OR5D14Q8NGL3 314 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 LHFPL5Q8TAF8 219 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 S1PR5Q9H228 398 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 C1orf198Q9H425 327 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 FRMPD3Q5JV73 1810 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 D6RAR5 112 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 GDF9O60383 454 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 APC2O95996 2303 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 ALOX5APP20292 161 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 LUMP51884 338 aaPredicted RBP13.36□□□□□ -0.27
CUX1-215ENST00000556210 RAG2P55895 527 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 DCAF7P61962 342 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 RIPPLY1Q0D2K3 151 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 GLDNQ6ZMI3 551 aaPredicted RBP13.36□□□□□ -0.27
CUX1-215ENST00000556210 C9orf40Q8IXQ3 194 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 SLC22A11Q9NSA0 550 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 SRPK3Q9UPE1 567 aa13.36□□□□□ -0.27
CUX1-215ENST00000556210 CACNA1DQ01668 2161 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 IGHV3-64DA0A0J9YX35 117 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 LOC100289279A0A1B0GTE1 492 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 GGT3PA6NGU5 568 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 DLSTP36957 453 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 AIMP2Q13155 320 aaKnown RBP13.35□□□□□ -0.27
CUX1-215ENST00000556210 SKP2Q13309 424 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 MFSD13AQ14CX5 517 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 RSPO4Q2I0M5 234 aaPredicted RBP13.35□□□□□ -0.27
CUX1-215ENST00000556210 CTHRC1Q96CG8 243 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 GDF15Q99988 308 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 SOSTQ9BQB4 213 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 RTN4RQ9BZR6 473 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 MCRIP1C9JLW8 97 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 TGM6O95932 706 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 LPLP06858 475 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 FOSL2P15408 326 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 FOXK1P85037 733 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 FUT7Q11130 342 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 NR0B2Q15466 257 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 SPIN3Q5JUX0 258 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 GTPBP8Q8N3Z3 284 aaPredicted RBP13.35□□□□□ -0.27
CUX1-215ENST00000556210 GVQW1Q8N7I0 195 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 OR1N1Q8NGS0 311 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 FLVCR1-AS1Q8TAF5 88 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 HGDQ93099 445 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 HLA-CQ95604 372 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 JAM3Q9BX67 310 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 SMIM3Q9BZL3 60 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 CST11Q9H112 138 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 CA10Q9NS85 328 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 DENND4CQ5VZ89 1909 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 FARS2O95363 451 aaKnown RBP13.35□□□□□ -0.27
CUX1-215ENST00000556210 ZNF93P35789 620 aaPredicted RBP13.35□□□□□ -0.27
CUX1-215ENST00000556210 MFGE8Q08431 387 aaPredicted RBP13.35□□□□□ -0.27
CUX1-215ENST00000556210 CHRFAM7AQ494W8 412 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 GLRX5Q86SX6 157 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 SLAMF6Q96DU3 332 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 HIF3AQ9Y2N7 669 aa13.35□□□□□ -0.27
CUX1-215ENST00000556210 FAM221AA4D161 298 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 FRG2CA6NGY1 282 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 IGHG1P01857 330 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 SWI5Q1ZZU3 235 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 HAVCR1Q96D42 359 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 C4orf45Q96LM5 186 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 TXNIPQ9H3M7 391 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 NTMQ9P121 344 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 FOXJ3Q9UPW0 622 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 PLXNA4Q9HCM2 1894 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 RER1O15258 196 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 SIGLEC5O15389 551 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 JMJD7P0C870 316 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 GLB1P16278 677 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 ACHEP22303 614 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 BDKRB2P30411 391 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 SIGLEC14Q08ET2 396 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 TMEM88Q6PEY1 159 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 Q7L0L9 218 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 YRDCQ86U90 279 aaKnown RBP13.34□□□□□ -0.27
CUX1-215ENST00000556210 OR2AK2Q8NG84 335 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 CHST6Q9GZX3 395 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 SPTAN1Q13813 2472 aaKnown RBP13.34□□□□□ -0.27
CUX1-215ENST00000556210 PI4KAP42356 2102 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 MEGF11A6BM72 1044 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 ZNF850A8MQ14 1090 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 HSPB6O14558 160 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms