RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 PAFAH1B2P68402 229 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 HNRNPA0Q13151 305 aaKnown RBP4.24□□□□□ -1.73
SCFD1-208ENST00000553278 TNXAQ16473 311 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 SGCAQ16586 387 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 MRGPRG-AS1Q2M3A8 158 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 NDUFAF6Q330K2 333 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 RFX4Q33E94 735 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 ZNF470Q6ECI4 717 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 C14orf178Q8N769 122 aaPredicted RBP4.24□□□□□ -1.73
SCFD1-208ENST00000553278 LINC00469Q8N7U9 141 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 OR10J6PQ8NGY7 276 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 TYMSOSQ8TAI1 123 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 MCOLN3Q8TDD5 553 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 AURKBQ96GD4 344 aaPredicted RBP4.24□□□□□ -1.73
SCFD1-208ENST00000553278 RASL11BQ9BPW5 248 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 LLPHQ9BRT6 129 aaKnown RBP4.24□□□□□ -1.73
SCFD1-208ENST00000553278 VNN3Q9NY84 501 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 TMEM9Q9P0T7 183 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 PAK5Q9P286 719 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 TNRQ92752 1358 aa4.24□□□□□ -1.73
SCFD1-208ENST00000553278 ANKRD63C9JTQ0 380 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 H7C2Y5 167 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 PEX7O00628 323 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 KMOO15229 486 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 CDC40O60508 579 aaKnown RBP eCLIP4.23□□□□□ -1.73
SCFD1-208ENST00000553278 TRAPPC6AO75865 159 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 MMP23AO75900 390 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 CDK14O94921 469 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 GCGP01275 180 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 TCP1P17987 556 aaKnown RBP4.23□□□□□ -1.73
SCFD1-208ENST00000553278 RAB3BP20337 219 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 MAS1LP35410 378 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 DNASE1L1P49184 302 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 FCN2Q15485 313 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 GFI1BQ5VTD9 330 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 C6orf89Q6UWU4 347 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 CD300LGQ6UXG3 332 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 LINC00173Q6ZV60 143 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 ABHD13Q7L211 337 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 ABHD12BQ7Z5M8 362 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-208ENST00000553278 SELENOHQ8IZQ5 122 aaKnown RBP4.23□□□□□ -1.73
SCFD1-208ENST00000553278 SPAG16Q8N0X2 631 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 OR5AR1Q8NGP9 310 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 ARL5BQ96KC2 179 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 REEP1Q9H902 201 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 CLEC2DQ9UHP7 191 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 ENPP5Q9UJA9 477 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 CLEC4EQ9ULY5 219 aa4.23□□□□□ -1.73
SCFD1-208ENST00000553278 MRPS18BQ9Y676 258 aaKnown RBP4.23□□□□□ -1.73
SCFD1-208ENST00000553278 DENND4AQ7Z401 1863 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 A0A0A6YYD5 115 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 CIB4A0PJX0 185 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 SYCE1LA8MT33 242 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 RNASEK-C17orf49H0YIS7 233 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 DFFAO00273 331 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 CALUO43852 315 aaPredicted RBP4.22□□□□□ -1.73
SCFD1-208ENST00000553278 SLC16A7O60669 478 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 ALOX12BO75342 701 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 RDH16O75452 317 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 TNFSF13O75888 250 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 EIF4EP06730 217 aaKnown RBP4.22□□□□□ -1.73
SCFD1-208ENST00000553278 TDGF1P13385 188 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 HOXB6P17509 224 aaKnown RBP4.22□□□□□ -1.73
SCFD1-208ENST00000553278 ARL2P36404 184 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 RANBP1P43487 201 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 TDGF1P3P51864 188 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 KRTAP10-11P60412 298 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 VSNL1P62760 191 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 REG3AQ06141 175 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 ST3GAL4Q11206 333 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 CPTPQ5TA50 214 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 FRMPD2BQ6IN97 320 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 APOBEC3HQ6NTF7 200 aaKnown RBP4.22□□□□□ -1.73
SCFD1-208ENST00000553278 TRMT10CQ7L0Y3 403 aaKnown RBP4.22□□□□□ -1.73
SCFD1-208ENST00000553278 KRTAP7-1Q8IUC3 87 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 ARRDC1Q8N5I2 433 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 OR51G1Q8NGK1 321 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 OR51A7Q8NH64 312 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 OR4S2Q8NH73 311 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 ZFP90Q8TF47 636 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 DCUN1D4Q92564 292 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 ATOH8Q96SQ7 321 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 TIMM29Q9BSF4 260 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 COPS4Q9BT78 406 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 MED10Q9BTT4 135 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 UBXN6Q9BZV1 441 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 OR2S2Q9NQN1 319 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 NECAP2Q9NVZ3 263 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 VAPAQ9P0L0 249 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 TRMT112Q9UI30 125 aaKnown RBP4.22□□□□□ -1.73
SCFD1-208ENST00000553278 MRM2Q9UI43 246 aaKnown RBP4.22□□□□□ -1.73
SCFD1-208ENST00000553278 NXT1Q9UKK6 140 aaKnown RBP4.22□□□□□ -1.73
SCFD1-208ENST00000553278 HEBP2Q9Y5Z4 205 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 PLEKHG1Q9ULL1 1385 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 CACNA1FO60840 1977 aa4.22□□□□□ -1.73
SCFD1-208ENST00000553278 CHD4Q14839 1912 aa4.21□□□□□ -1.74
SCFD1-208ENST00000553278 IGLV1-36A0A0B4J1U3 117 aa4.21□□□□□ -1.74
SCFD1-208ENST00000553278 ANKRD20A5PA0PJZ0 165 aa4.21□□□□□ -1.74
SCFD1-208ENST00000553278 EPOPA6NHQ4 379 aa4.21□□□□□ -1.74
SCFD1-208ENST00000553278 KRTAP4-16G5E9R7 235 aaPredicted RBP4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms