RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 BEX4Q9NWD9 120 aaPredicted RBP13.98□□□□□ -0.17
CHMP1A-209ENST00000550872 CELSR1Q9NYQ6 3014 aa13.98□□□□□ -0.17
CHMP1A-209ENST00000550872 SLC22A31A6NKX4 558 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 B9A039 149 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 F5H5K5 113 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 DLGAP1O14490 977 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 SLC16A6O15403 523 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 SMPD2O60906 423 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 NGFP01138 241 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 MRPL3P09001 348 aaKnown RBP13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 ERVS71-1P61550 626 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 TAF13Q15543 124 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 MSMPQ1L6U9 139 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 MST1LQ2TV78 715 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 SPATC1Q76KD6 591 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 SLC16A9Q7RTY1 509 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 ZNF454Q8N9F8 522 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 ABHD4Q8TB40 342 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 ST7LQ8TDW4 575 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 THEM6Q8WUY1 208 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 IGFBPL1Q8WX77 278 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 MBD6Q96DN6 1003 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 SLAMF6Q96DU3 332 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 ZNF582Q96NG8 517 aaPredicted RBP13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 ABHD6Q9BV23 337 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 VCXQ9H320 206 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 PLK3Q9H4B4 646 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 DNAJC27Q9NZQ0 273 aa13.97□□□□□ -0.17
CHMP1A-209ENST00000550872 BMP4P12644 408 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 CDKN1AP38936 164 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 TPTEP56180 551 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 PPP1CBP62140 327 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 SNRPGP62308 76 aaKnown RBP13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 EFNB3Q15768 340 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 RSPO1Q2MKA7 263 aaPredicted RBP13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 C11orf71Q6IPW1 123 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 RFPL4BQ6ZWI9 263 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 C1orf174Q8IYL3 243 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 DHRSXQ8N5I4 330 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 OTOSQ8NHW6 89 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 CYGBQ8WWM9 190 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 SPTSSAQ969W0 71 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 MRPL24Q96A35 216 aaKnown RBP13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 CNN2Q99439 309 aaKnown RBP13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 SYT3Q9BQG1 590 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 COPS4Q9BT78 406 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 MRPL37Q9BZE1 423 aaKnown RBP13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 YIPF3Q9GZM5 350 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 TBCCD1Q9NVR7 557 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 WARS2Q9UGM6 360 aaKnown RBP13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 DUSP13Q9UII6 198 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 FZR1Q9UM11 496 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 PMF1-BGLAPU3KQ54 211 aa13.96□□□□□ -0.17
CHMP1A-209ENST00000550872 F8P00451 2351 aa13.96□□□□□ -0.18
CHMP1A-209ENST00000550872 ARFGEF3Q5TH69 2177 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 TMEM129A0AVI4 362 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 ZNF878C9JN71 531 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 OVOL3O00110 214 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 MPZL2O60487 215 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 ICMTO60725 284 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 LYNP07948 512 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 HTR1FP30939 366 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 SLC15A1P46059 708 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 RGS6P49758 472 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 NUDT6P53370 316 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 HCCSP53701 268 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 SELENOVP59797 346 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 SNRPD2P62316 118 aaKnown RBP13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 SWI5Q1ZZU3 235 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 ZNF718Q3SXZ3 478 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 SPATA46Q5T0L3 261 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 TTC23Q5W5X9 447 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 SYNPRQ8TBG9 265 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 SLC25A40Q8TBP6 338 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 IPCEF1Q8WWN9 437 aaPredicted RBP13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 RFKQ969G6 155 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 TRMT61AQ96FX7 289 aaKnown RBP13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 APOL4Q9BPW4 351 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 CACNG6Q9BXT2 260 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 DDX28Q9NUL7 540 aaKnown RBP13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 HAO2Q9NYQ3 351 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 AASSQ9UDR5 926 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 LAMP5Q9UJQ1 280 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 STARD10Q9Y365 291 aa13.95□□□□□ -0.18
CHMP1A-209ENST00000550872 M0R135 149 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 ENTPD6O75354 484 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 ACSM4P0C7M7 580 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 ALOX5APP20292 161 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 GCH1P30793 250 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 ATP6V1E1P36543 226 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 SLC6A9P48067 706 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 PRRC2AP48634 2157 aaKnown RBP13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 PRKXP51817 358 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 ART1P52961 327 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 RIPPLY3P57055 190 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 RIPK1Q13546 671 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 GGTLC2Q14390 218 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 OCLNQ16625 522 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 KRTAP27-1Q3LI81 207 aa13.94□□□□□ -0.18
CHMP1A-209ENST00000550872 SLC25A30Q5SVS4 291 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms