RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 IGHV1-69P01742 117 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 TSPAN19P0C672 248 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 COX5BP10606 129 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 NR2C1P13056 603 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 RAC2P15153 192 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 MSR1P21757 451 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 GUCA1AP43080 201 aaPredicted RBP10.55□□□□□ -0.72
SCAF11-208ENST00000546534 HTR5AP47898 357 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 SRP9P49458 86 aaKnown RBP10.55□□□□□ -0.72
SCAF11-208ENST00000546534 EGR3Q06889 387 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 TOP3AQ13472 1001 aaPredicted RBP10.55□□□□□ -0.72
SCAF11-208ENST00000546534 KRT71Q3SY84 523 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 C1orf94Q6P1W5 598 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 DCDC5Q6ZRR9 648 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 SYT9Q86SS6 491 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 FUNDC1Q8IVP5 155 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 C1orf87Q8N0U7 546 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 C19orf18Q8NEA5 215 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 OR8G5Q8NG78 346 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 OR13G1Q8NGZ3 307 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 WDFY2Q96P53 400 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 ALG12Q9BV10 488 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 PCDHAC1Q9H158 963 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.55□□□□□ -0.72
SCAF11-208ENST00000546534 C20orf141Q9NUB4 165 aa10.55□□□□□ -0.72
SCAF11-208ENST00000546534 ZNF816-ZNF321PA0A0X1KG74 233 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 EVPLLA8MZ36 301 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 DOK2O60496 412 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 SASH3O75995 380 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 CD247P20963 164 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 PSMB10P40306 273 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 LOXL3P58215 753 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 OR2T2Q6IF00 324 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 GDPGP1Q6ZNW5 385 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 NKAIN4Q8IVV8 208 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 SLC30A8Q8IWU4 369 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 TMEM255BQ8WV15 326 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 SLC7A6Q92536 515 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 LHX4Q969G2 390 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 SGTBQ96EQ0 304 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 COG8Q96MW5 612 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 TECTBQ96PL2 329 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 DPAGT1Q9H3H5 408 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 EMC7Q9NPA0 242 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 CORO2BQ9UQ03 480 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 DOCK11Q5JSL3 2073 aa10.54□□□□□ -0.72
SCAF11-208ENST00000546534 MLNRO43193 412 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 SGCEO43556 437 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 TSPAN9O75954 239 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 LIPFP07098 398 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 RPL27P61353 136 aaKnown RBP10.53□□□□□ -0.72
SCAF11-208ENST00000546534 VSNL1P62760 191 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 CD276Q5ZPR3 534 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 DHRS7BQ6IAN0 325 aaPredicted RBP10.53□□□□□ -0.72
SCAF11-208ENST00000546534 FBXW12Q6X9E4 464 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 ANKRD42Q8N9B4 389 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 SCCPDHQ8NBX0 429 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 C11orf65Q8NCR3 313 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 LIPHQ8WWY8 451 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 SPDL1Q96EA4 605 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 CPPED1Q9BRF8 314 aaPredicted RBP10.53□□□□□ -0.72
SCAF11-208ENST00000546534 SIRPDQ9H106 197 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 POLE4Q9NR33 117 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 PTTG3PQ9NZH4 202 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 CTSZQ9UBR2 303 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 TMCC3Q9ULS5 477 aa10.53□□□□□ -0.72
SCAF11-208ENST00000546534 FUT4P22083 530 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 RBM34P42696 430 aaKnown RBP10.52□□□□□ -0.73
SCAF11-208ENST00000546534 NPY4RP50391 375 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 HOXA4Q00056 320 aaPredicted RBP10.52□□□□□ -0.73
SCAF11-208ENST00000546534 SCRN3Q0VDG4 424 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 ALG10Q5BKT4 473 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 VAX1Q5SQQ9 334 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 METTL11BQ5VVY1 283 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 PDZD9Q8IXQ8 264 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 BHLHE23Q8NDY6 225 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 FNDC8Q8TC99 324 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 AENQ8WTP8 325 aaKnown RBP10.52□□□□□ -0.73
SCAF11-208ENST00000546534 LRTOMTQ8WZ04 291 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 PPP1R14AQ96A00 147 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 TAMM41Q96BW9 452 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 ZBTB9Q96C00 473 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 ZNF582Q96NG8 517 aaPredicted RBP10.52□□□□□ -0.73
SCAF11-208ENST00000546534 WACQ9BTA9 647 aa10.52□□□□□ -0.73
SCAF11-208ENST00000546534 TET2Q6N021 2002 aaPredicted RBP10.51□□□□□ -0.73
SCAF11-208ENST00000546534 H7C1C5 153 aa10.51□□□□□ -0.73
SCAF11-208ENST00000546534 FAM20BO75063 409 aa10.51□□□□□ -0.73
SCAF11-208ENST00000546534 IGF2P01344 180 aa10.51□□□□□ -0.73
SCAF11-208ENST00000546534 HLA-DPB1P04440 258 aa10.51□□□□□ -0.73
SCAF11-208ENST00000546534 VIMP08670 466 aaKnown RBP10.51□□□□□ -0.73
SCAF11-208ENST00000546534 IRF2P14316 349 aa10.51□□□□□ -0.73
SCAF11-208ENST00000546534 MRPL19P49406 292 aaKnown RBP10.51□□□□□ -0.73
SCAF11-208ENST00000546534 STX1BP61266 288 aa10.51□□□□□ -0.73
SCAF11-208ENST00000546534 ARF6P62330 175 aa10.51□□□□□ -0.73
SCAF11-208ENST00000546534 LCN6P62502 163 aa10.51□□□□□ -0.73
SCAF11-208ENST00000546534 COX10Q12887 443 aa10.51□□□□□ -0.73
SCAF11-208ENST00000546534 HERPUD1Q15011 391 aa10.51□□□□□ -0.73
SCAF11-208ENST00000546534 CYP51A1Q16850 503 aa10.51□□□□□ -0.73
SCAF11-208ENST00000546534 SLC35E4Q6ICL7 350 aa10.51□□□□□ -0.73
SCAF11-208ENST00000546534 DLEU7Q6UYE1 221 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms