RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 CYB561P49447 251 aa12.53□□□□□ -0.4
LDB3-207ENST00000542786 CLDN15P56746 228 aa12.53□□□□□ -0.4
LDB3-207ENST00000542786 RAC3P60763 192 aa12.53□□□□□ -0.4
LDB3-207ENST00000542786 LSM6P62312 80 aaKnown RBP12.53□□□□□ -0.4
LDB3-207ENST00000542786 HIST1H3AP68431 136 aa12.53□□□□□ -0.4
LDB3-207ENST00000542786 TOMM20Q15388 145 aa12.53□□□□□ -0.4
LDB3-207ENST00000542786 C2orf76Q3KRA6 126 aa12.53□□□□□ -0.4
LDB3-207ENST00000542786 TMEM255AQ5JRV8 349 aa12.53□□□□□ -0.4
LDB3-207ENST00000542786 HIST2H3PS2Q5TEC6 136 aa12.53□□□□□ -0.4
LDB3-207ENST00000542786 HIST2H3AQ71DI3 136 aa12.53□□□□□ -0.4
LDB3-207ENST00000542786 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.53□□□□□ -0.4
LDB3-207ENST00000542786 PLPP7Q8NBV4 271 aa12.53□□□□□ -0.4
LDB3-207ENST00000542786 UBASH3BQ8TF42 649 aa12.53□□□□□ -0.4
LDB3-207ENST00000542786 SCMH1Q96GD3 660 aa12.53□□□□□ -0.4
LDB3-207ENST00000542786 THOC3Q96J01 351 aaKnown RBP12.53□□□□□ -0.4
LDB3-207ENST00000542786 NKX3-1Q99801 234 aaPredicted RBP12.53□□□□□ -0.4
LDB3-207ENST00000542786 SF3B5Q9BWJ5 86 aaKnown RBP12.53□□□□□ -0.4
LDB3-207ENST00000542786 NIPAL2Q9H841 368 aa12.53□□□□□ -0.4
LDB3-207ENST00000542786 WDFY4Q6ZS81 3184 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 TMEM272A0A1B0GTI8 110 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 TLX3O43711 291 aaPredicted RBP12.52□□□□□ -0.41
LDB3-207ENST00000542786 NEURL1O76050 574 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 TCRBP04435 133 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 NR2C1P13056 603 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 CNR1P21554 472 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 NTF4P34130 210 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 CD96P40200 585 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 GABREP78334 506 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 OLFML2AQ68BL7 652 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 ABLIM2Q6H8Q1 611 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 C20orf196Q8IYI0 205 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 ZNF416Q9BWM5 594 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 DPAGT1Q9H3H5 408 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 MOB1AQ9H8S9 216 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 RANGRFQ9HD47 186 aaPredicted RBP12.52□□□□□ -0.41
LDB3-207ENST00000542786 ZNF319Q9P2F9 582 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 CKLFQ9UBR5 152 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 NUBP2Q9Y5Y2 271 aa12.52□□□□□ -0.41
LDB3-207ENST00000542786 ANKRD20A5PA0PJZ0 165 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 MEGF11A6BM72 1044 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 GGT3PA6NGU5 568 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 ZNF716A6NP11 495 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 ACOT7O00154 380 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 KDM4BO94953 1096 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 MT-ND4P03905 459 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 CCL1P22362 96 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 GIFP27352 417 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 SELENOPP49908 381 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 GFRA1P56159 465 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 TMEM164Q5U3C3 297 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 GLT8D1Q68CQ7 371 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 KLHL24Q6TFL4 600 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 OR6M1Q8NGM8 313 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 OR1J2Q8NGS2 313 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 OR2AJ1Q8NGZ0 328 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 OR14L1PQ8NHC6 308 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 ADAT3Q96EY9 351 aaPredicted RBP12.51□□□□□ -0.41
LDB3-207ENST00000542786 CACNG6Q9BXT2 260 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 B3GNT4Q9C0J1 378 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 GHITMQ9H3K2 345 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 NEK6Q9HC98 313 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 HRASLSQ9HDD0 168 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 ZFP64Q9NPA5 681 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 NUDT15Q9NV35 164 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 CGGBP1Q9UFW8 167 aaPredicted RBP12.51□□□□□ -0.41
LDB3-207ENST00000542786 IL17BQ9UHF5 180 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 POLR1DQ9Y2S0 133 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 NPIPA2E9PIF3 369 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 NPIPA3F8WFD2 350 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 GMDSO60547 372 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 MSR1P21757 451 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 CCR6P51684 374 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 SPEM2Q0P670 501 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 DCAF10Q5QP82 559 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 ZNF813Q6ZN06 617 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 BTN2A1Q7KYR7 527 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 TCTE3Q8IZS6 198 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 OR8B12Q8NGG6 310 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 C15orf40Q8WUR7 153 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 FCAMRQ8WWV6 532 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 FYTTD1Q96QD9 318 aaKnown RBP12.51□□□□□ -0.41
LDB3-207ENST00000542786 PARD6AQ9NPB6 346 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 STMN3Q9NZ72 180 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 COPZ2Q9P299 210 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 KLK11Q9UBX7 282 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 RCE1Q9Y256 329 aa12.51□□□□□ -0.41
LDB3-207ENST00000542786 CACNA1HO95180 2353 aa12.5□□□□□ -0.41
LDB3-207ENST00000542786 A0A0A6YYJ9 748 aa12.5□□□□□ -0.41
LDB3-207ENST00000542786 CENPXA8MT69 81 aa12.5□□□□□ -0.41
LDB3-207ENST00000542786 DHHO43323 396 aa12.5□□□□□ -0.41
LDB3-207ENST00000542786 TNFSF15O95150 251 aa12.5□□□□□ -0.41
LDB3-207ENST00000542786 IGLV3-1P01715 115 aa12.5□□□□□ -0.41
LDB3-207ENST00000542786 GABRA1P14867 456 aa12.5□□□□□ -0.41
LDB3-207ENST00000542786 HTR2CP28335 458 aa12.5□□□□□ -0.41
LDB3-207ENST00000542786 RAG2P55895 527 aa12.5□□□□□ -0.41
LDB3-207ENST00000542786 RAB25P57735 213 aa12.5□□□□□ -0.41
LDB3-207ENST00000542786 ZNF121P58317 390 aaPredicted RBP12.5□□□□□ -0.41
LDB3-207ENST00000542786 RRAS2P62070 204 aaPredicted RBP12.5□□□□□ -0.41
LDB3-207ENST00000542786 SPOCK1Q08629 439 aa12.5□□□□□ -0.41
LDB3-207ENST00000542786 SNTB2Q13425 540 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms