RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 EVA1AQ9H8M9 152 aa15.05■□□□□ -0
USP28-208ENST00000540438 LOC100289279A0A1B0GTE1 492 aa15.04■□□□□ -0
USP28-208ENST00000540438 A0A1W2PQD3 144 aa15.04■□□□□ -0
USP28-208ENST00000540438 LIPT2A6NK58 231 aa15.04■□□□□ -0
USP28-208ENST00000540438 H7C417 338 aa15.04■□□□□ -0
USP28-208ENST00000540438 I3L521 148 aa15.04■□□□□ -0
USP28-208ENST00000540438 SYT7O43581 403 aa15.04■□□□□ -0
USP28-208ENST00000540438 ZNF205O95201 554 aa15.04■□□□□ -0
USP28-208ENST00000540438 CSRP1P21291 193 aaKnown RBP15.04■□□□□ -0
USP28-208ENST00000540438 PMPCAQ10713 525 aa15.04■□□□□ -0
USP28-208ENST00000540438 STEAP1BQ6NZ63 245 aa15.04■□□□□ -0
USP28-208ENST00000540438 GLDNQ6ZMI3 551 aaPredicted RBP15.04■□□□□ -0
USP28-208ENST00000540438 RHOUQ7L0Q8 258 aa15.04■□□□□ -0
USP28-208ENST00000540438 IFI44Q8TCB0 444 aa15.04■□□□□ -0
USP28-208ENST00000540438 CASTOR1Q8WTX7 329 aa15.04■□□□□ -0
USP28-208ENST00000540438 MTFP1Q9UDX5 166 aa15.04■□□□□ -0
USP28-208ENST00000540438 MGAQ8IWI9 3026 aa15.04■□□□□ -0
USP28-208ENST00000540438 RIF1Q5UIP0 2472 aaKnown RBP15.04■□□□□ -0
USP28-208ENST00000540438 TNFSF12-TNFSF13A0A0A6YY99 330 aa15.04■□□□□ -0
USP28-208ENST00000540438 ANKUB1A6NFN9 424 aa15.04■□□□□ -0
USP28-208ENST00000540438 WIPF3A6NGB9 483 aa15.04■□□□□ -0
USP28-208ENST00000540438 SLC17A2O00624 439 aa15.04■□□□□ -0
USP28-208ENST00000540438 FOSL2P15408 326 aa15.04■□□□□ -0
USP28-208ENST00000540438 CRABP1P29762 137 aa15.04■□□□□ -0
USP28-208ENST00000540438 CAPZA2P47755 286 aa15.04■□□□□ -0
USP28-208ENST00000540438 SLC6A9P48067 706 aa15.04■□□□□ -0
USP28-208ENST00000540438 NR0B2Q15466 257 aa15.04■□□□□ -0
USP28-208ENST00000540438 CREB3L2Q70SY1 520 aa15.04■□□□□ -0
USP28-208ENST00000540438 COQ8AQ8NI60 647 aa15.04■□□□□ -0
USP28-208ENST00000540438 KCNK17Q96T54 332 aa15.04■□□□□ -0
USP28-208ENST00000540438 SELENOIQ9C0D9 397 aa15.04■□□□□ -0
USP28-208ENST00000540438 TNFRSF10AO00220 468 aa15.03■□□□□ -0
USP28-208ENST00000540438 SLC22A5O76082 557 aa15.03■□□□□ -0
USP28-208ENST00000540438 CCL3P10147 92 aa15.03■□□□□ -0
USP28-208ENST00000540438 CLDN17P56750 224 aa15.03■□□□□ -0
USP28-208ENST00000540438 AP3S2P59780 193 aa15.03■□□□□ -0
USP28-208ENST00000540438 CDNFQ49AH0 187 aa15.03■□□□□ -0
USP28-208ENST00000540438 TEX30Q5JUR7 227 aa15.03■□□□□ -0
USP28-208ENST00000540438 RAET1LQ5VY80 246 aa15.03■□□□□ -0
USP28-208ENST00000540438 FAM57BQ71RH2 274 aa15.03■□□□□ -0
USP28-208ENST00000540438 CDH24Q86UP0 819 aa15.03■□□□□ -0
USP28-208ENST00000540438 WDSUB1Q8N9V3 476 aa15.03■□□□□ -0
USP28-208ENST00000540438 DDIT4LQ96D03 193 aa15.03■□□□□ -0
USP28-208ENST00000540438 SEH1LQ96EE3 360 aa15.03■□□□□ -0
USP28-208ENST00000540438 SHDQ96IW2 340 aa15.03■□□□□ -0
USP28-208ENST00000540438 NECAB3Q96P71 396 aaPredicted RBP15.03■□□□□ -0
USP28-208ENST00000540438 RBP7Q96R05 134 aa15.03■□□□□ -0
USP28-208ENST00000540438 PRMT8Q9NR22 394 aaPredicted RBP15.03■□□□□ -0
USP28-208ENST00000540438 COPZ2Q9P299 210 aa15.03■□□□□ -0
USP28-208ENST00000540438 R4GMQ9 66 aa15.03■□□□□ -0
USP28-208ENST00000540438 LEUTXA8MZ59 168 aa15.03■□□□□ -0
USP28-208ENST00000540438 CENPBD1B2RD01 187 aa15.03■□□□□ -0
USP28-208ENST00000540438 NDUFB6O95139 128 aa15.03■□□□□ -0
USP28-208ENST00000540438 RAB3DO95716 219 aa15.03■□□□□ -0
USP28-208ENST00000540438 ECDO95905 644 aaPredicted RBP15.03■□□□□ -0
USP28-208ENST00000540438 TTRP02766 147 aa15.03■□□□□ -0
USP28-208ENST00000540438 DBHP09172 617 aa15.03■□□□□ -0
USP28-208ENST00000540438 QDPRP09417 244 aa15.03■□□□□ -0
USP28-208ENST00000540438 HSD11B1P28845 292 aa15.03■□□□□ -0
USP28-208ENST00000540438 SORDQ00796 357 aa15.03■□□□□ -0
USP28-208ENST00000540438 ELMOD2Q8IZ81 293 aa15.03■□□□□ -0
USP28-208ENST00000540438 TMEM104Q8NE00 496 aa15.03■□□□□ -0
USP28-208ENST00000540438 OR1J2Q8NGS2 313 aa15.03■□□□□ -0
USP28-208ENST00000540438 SAP25Q8TEE9 199 aa15.03■□□□□ -0
USP28-208ENST00000540438 HGDQ93099 445 aa15.03■□□□□ -0
USP28-208ENST00000540438 M0R233 179 aa15.03■□□□□ -0
USP28-208ENST00000540438 IGHV3-9P01782 118 aa15.03■□□□□ -0
USP28-208ENST00000540438 PNLIPP16233 465 aa15.03■□□□□ -0
USP28-208ENST00000540438 PTGDSP41222 190 aa15.03■□□□□ -0
USP28-208ENST00000540438 ACY1Q03154 408 aa15.03■□□□□ -0
USP28-208ENST00000540438 PLPPR5Q32ZL2 321 aa15.03■□□□□ -0
USP28-208ENST00000540438 GLT8D1Q68CQ7 371 aa15.03■□□□□ -0
USP28-208ENST00000540438 PRSS42Q7Z5A4 293 aa15.03■□□□□ -0
USP28-208ENST00000540438 UEVLDQ8IX04 471 aa15.03■□□□□ -0
USP28-208ENST00000540438 CLEC4MQ9H2X3 399 aaPredicted RBP15.03■□□□□ -0
USP28-208ENST00000540438 WNT16Q9UBV4 365 aa15.03■□□□□ -0
USP28-208ENST00000540438 KLK13Q9UKR3 277 aa15.03■□□□□ -0
USP28-208ENST00000540438 SRPK3Q9UPE1 567 aa15.03■□□□□ -0
USP28-208ENST00000540438 CTDSPLO15194 276 aa15.02■□□□□ -0
USP28-208ENST00000540438 METTL11BQ5VVY1 283 aa15.02■□□□□ -0
USP28-208ENST00000540438 GABRG1Q8N1C3 465 aa15.02■□□□□ -0
USP28-208ENST00000540438 SFXN2Q96NB2 322 aa15.02■□□□□ -0
USP28-208ENST00000540438 PBOV1Q9GZY1 135 aa15.02■□□□□ -0
USP28-208ENST00000540438 ELL3Q9HB65 397 aaPredicted RBP15.02■□□□□ -0
USP28-208ENST00000540438 SCP2D1Q9UJQ7 156 aa15.02■□□□□ -0
USP28-208ENST00000540438 GDF2Q9UK05 429 aaPredicted RBP15.02■□□□□ -0
USP28-208ENST00000540438 WIF1Q9Y5W5 379 aa15.02■□□□□ -0
USP28-208ENST00000540438 SULT2B1O00204 365 aa15.02□□□□□ -0.01
USP28-208ENST00000540438 ZFAND5O76080 213 aa15.02□□□□□ -0.01
USP28-208ENST00000540438 LAP3P28838 519 aa15.02□□□□□ -0.01
USP28-208ENST00000540438 STARP49675 285 aa15.02□□□□□ -0.01
USP28-208ENST00000540438 ANGPTL5Q86XS5 388 aa15.02□□□□□ -0.01
USP28-208ENST00000540438 SLC25A28Q96A46 364 aa15.02□□□□□ -0.01
USP28-208ENST00000540438 ZNF385AQ96PM9 386 aaKnown RBP15.02□□□□□ -0.01
USP28-208ENST00000540438 SLC6A7Q99884 636 aa15.02□□□□□ -0.01
USP28-208ENST00000540438 ZNF160Q9HCG1 818 aa15.02□□□□□ -0.01
USP28-208ENST00000540438 SDHAF3Q9NRP4 125 aa15.02□□□□□ -0.01
USP28-208ENST00000540438 LHFPL6Q9Y693 200 aa15.02□□□□□ -0.01
USP28-208ENST00000540438 A0A0G2JMM0 328 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 A0A1W2PPB8 328 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 168.9 ms