RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 CD74P04233 296 aa12.59□□□□□ -0.39
LIG1-203ENST00000536218 SERPINA5P05154 406 aa12.59□□□□□ -0.39
LIG1-203ENST00000536218 CD1CP29017 333 aa12.59□□□□□ -0.39
LIG1-203ENST00000536218 CAV2P51636 162 aa12.59□□□□□ -0.39
LIG1-203ENST00000536218 OR1Q1Q15612 314 aa12.59□□□□□ -0.39
LIG1-203ENST00000536218 TCEAL6Q6IPX3 200 aa12.59□□□□□ -0.39
LIG1-203ENST00000536218 WDR88Q6ZMY6 472 aa12.59□□□□□ -0.39
LIG1-203ENST00000536218 RANBP3LQ86VV4 465 aaPredicted RBP12.59□□□□□ -0.39
LIG1-203ENST00000536218 TMPRSS12Q86WS5 348 aa12.59□□□□□ -0.39
LIG1-203ENST00000536218 KISS1RQ969F8 398 aaPredicted RBP12.59□□□□□ -0.39
LIG1-203ENST00000536218 ZMYND19Q96E35 227 aaPredicted RBP12.59□□□□□ -0.39
LIG1-203ENST00000536218 SPACA7Q96KW9 195 aa12.59□□□□□ -0.39
LIG1-203ENST00000536218 SLC2A4RGQ9NR83 387 aa12.59□□□□□ -0.39
LIG1-203ENST00000536218 C20orf141Q9NUB4 165 aa12.59□□□□□ -0.39
LIG1-203ENST00000536218 ZDHHC8Q9ULC8 765 aa12.59□□□□□ -0.39
LIG1-203ENST00000536218 TRAV18A0A075B6X5 111 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 H7C417 338 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 PIN1P1O15428 100 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 CD8AP01732 235 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 DBIP07108 87 aaKnown RBP12.58□□□□□ -0.4
LIG1-203ENST00000536218 DCNP07585 359 aaKnown RBP12.58□□□□□ -0.4
LIG1-203ENST00000536218 CSF1P09603 554 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 RAB40ALP0C0E4 278 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 ID4P47928 161 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 CDK5R1Q15078 307 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 MST1LQ2TV78 715 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 EXOSC6Q5RKV6 272 aaKnown RBP12.58□□□□□ -0.4
LIG1-203ENST00000536218 COL13A1Q5TAT6 717 aaPredicted RBP12.58□□□□□ -0.4
LIG1-203ENST00000536218 NSUN5P2Q63ZY6 315 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 GKN2Q86XP6 184 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 NUDCD2Q8WVJ2 157 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 RAB40AQ8WXH6 277 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 SMIM19Q96E16 107 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 PELI1Q96FA3 418 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 DUSP22Q9NRW4 184 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 MTFP1Q9UDX5 166 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 FARSAQ9Y285 508 aaKnown RBP12.58□□□□□ -0.4
LIG1-203ENST00000536218 COL4A2P08572 1712 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 MED6O75586 246 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 SLC35E2P0CK97 266 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 RNH1P13489 461 aaKnown RBP12.58□□□□□ -0.4
LIG1-203ENST00000536218 NID1P14543 1247 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 IL9P15248 144 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 SIRPAP78324 504 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 DHRS2Q13268 280 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 ZNF239Q16600 458 aaKnown RBP12.58□□□□□ -0.4
LIG1-203ENST00000536218 DECR1Q16698 335 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 ZBTB8AQ96BR9 441 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 CHST5Q9GZS9 411 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 PRTFDC1Q9NRG1 225 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 GPR27Q9NS67 375 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 CDV3Q9UKY7 258 aaKnown RBP12.58□□□□□ -0.4
LIG1-203ENST00000536218 TMEM184BQ9Y519 407 aaPredicted RBP12.58□□□□□ -0.4
LIG1-203ENST00000536218 COL6A3P12111 3177 aa12.58□□□□□ -0.4
LIG1-203ENST00000536218 A0A087WV62 115 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 C5orf51A6NDU8 294 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 FAM86C2PA6NEL3 165 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 NUDT19A8MXV4 375 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 IDSB3KWA1 339 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 C10orf142B7Z368 130 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 SOX15O60248 233 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 GLSO94925 669 aaPredicted RBP12.57□□□□□ -0.4
LIG1-203ENST00000536218 HOXB5P09067 269 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 ZGLP1P0C6A0 271 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 SLC25A4P12235 298 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 HOXA5P20719 270 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 CAPZBP47756 277 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 EIPR1Q53HC9 387 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 LIPNQ5VXI9 398 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 STEAP1BQ6NZ63 245 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 ZNF585AQ6P3V2 769 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 MBOAT2Q6ZWT7 520 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 GJD3Q8N144 294 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 ZNF511Q8NB15 262 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 OR4K17Q8NGC6 315 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 KIRREL1Q96J84 757 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 ADGRL4Q9HBW9 690 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 NCDNQ9UBB6 729 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 CACFD1Q9UGQ2 172 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 LRP4O75096 1905 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 HCKP08631 526 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 PAX6P26367 422 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 CDX1P47902 265 aaPredicted RBP12.57□□□□□ -0.4
LIG1-203ENST00000536218 PKIAP61925 76 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 RPS11P62280 158 aaKnown RBP eCLIP12.57□□□□□ -0.4
LIG1-203ENST00000536218 PSG6Q00889 435 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 FOXK2Q01167 660 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 VWA2Q5GFL6 755 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 OR2A2Q6IF42 318 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 PRSS58Q8IYP2 241 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 OR51A7Q8NH64 312 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 PARP12Q9H0J9 701 aaKnown RBP12.57□□□□□ -0.4
LIG1-203ENST00000536218 LPAR3Q9UBY5 353 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 A0A1W2PR77 199 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 MCIDASD6RGH6 385 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 AMY2AP04746 511 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 LSM6P62312 80 aaKnown RBP12.57□□□□□ -0.4
LIG1-203ENST00000536218 CRMP1Q14194 572 aa12.57□□□□□ -0.4
LIG1-203ENST00000536218 ZNHIT3Q15649 155 aaPredicted RBP12.57□□□□□ -0.4
LIG1-203ENST00000536218 RNF113BQ8IZP6 322 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms