RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 FZR1Q9UM11 496 aa12.91□□□□□ -0.34
CPSF1-208ENST00000532560 G3V2T6 193 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 H7C1Q1 480 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 ABHD16AO95870 558 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 HMGN1P05114 100 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 ERCC1P07992 297 aaPredicted RBP12.9□□□□□ -0.34
CPSF1-208ENST00000532560 ZNF23P17027 643 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 PAICSP22234 425 aaKnown RBP12.9□□□□□ -0.34
CPSF1-208ENST00000532560 BLVRAP53004 296 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 DSCR9P59020 149 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 TNK1Q13470 666 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 KCTD21Q4G0X4 260 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 MBNL2Q5VZF2 373 aaKnown RBP12.9□□□□□ -0.34
CPSF1-208ENST00000532560 ACSM5Q6NUN0 579 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 ABHD4Q8TB40 342 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 SYNPRQ8TBG9 265 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 ZNRF4Q8WWF5 429 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 IPCEF1Q8WWN9 437 aaPredicted RBP12.9□□□□□ -0.34
CPSF1-208ENST00000532560 DCLRE1CQ96SD1 692 aaKnown RBP12.9□□□□□ -0.34
CPSF1-208ENST00000532560 YTHDF1Q9BYJ9 559 aaKnown RBP12.9□□□□□ -0.34
CPSF1-208ENST00000532560 RAB1BQ9H0U4 201 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 MYOZ1Q9NP98 299 aaPredicted RBP12.9□□□□□ -0.34
CPSF1-208ENST00000532560 TBCCD1Q9NVR7 557 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 PTTG2Q9NZH5 202 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 MYRFQ9Y2G1 1151 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 VPS13CQ709C8 3753 aa12.9□□□□□ -0.34
CPSF1-208ENST00000532560 ZNF469Q96JG9 3925 aaPredicted RBP12.9□□□□□ -0.34
CPSF1-208ENST00000532560 A0A1W2PPW3 197 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 J3QW42 95 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 SURF4O15260 269 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 GYPBP06028 91 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 ADRA2AP08913 450 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 INHBBP09529 407 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 ZNF823P16415 610 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 TUBG1P23258 451 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 FMO3P31513 532 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 CRISP1P54107 249 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 PPP1CBP62140 327 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 C6orf52Q5T4I8 152 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 KDM4DQ6B0I6 523 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 CORO6Q6QEF8 472 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 CLEC2AQ6UVW9 174 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 LYPD4Q6UWN0 246 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 CFAP77Q6ZQR2 320 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 LINC00346Q8IVM7 164 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 ZNF525Q8N782 197 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 OR51L1Q8NGJ5 315 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 OR2AJ1Q8NGZ0 328 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 MARS2Q96GW9 593 aaKnown RBP12.89□□□□□ -0.35
CPSF1-208ENST00000532560 CDADC1Q9BWV3 514 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 HCAR1Q9BXC0 346 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 TEX12Q9BXU0 123 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 MS4A5Q9H3V2 200 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 PNRC2Q9NPJ4 139 aaKnown RBP12.89□□□□□ -0.35
CPSF1-208ENST00000532560 TUBG2Q9NRH3 451 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 KRT84Q9NSB2 600 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 SLCO1C1Q9NYB5 712 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 DUSP13Q9UII6 198 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 GPR160Q9UJ42 338 aa12.89□□□□□ -0.35
CPSF1-208ENST00000532560 ACANP16112 2415 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 TVP23AA6NH52 213 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 LY6HO94772 140 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 NGFP01138 241 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 IGHV3-13P01766 116 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 TFAP2AP05549 437 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 CLUP10909 449 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 MYF6P23409 242 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 GCH1P30793 250 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 ALDH3B1P43353 468 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 RGS6P49758 472 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 ENTPD1P49961 510 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 ESRRGP62508 458 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 ECH1Q13011 328 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 MAD2L1BPQ15013 274 aaPredicted RBP12.88□□□□□ -0.35
CPSF1-208ENST00000532560 PCK2Q16822 640 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 NKPD1Q17RQ9 610 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 KRTAP27-1Q3LI81 207 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 ZNF718Q3SXZ3 478 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 SPATA46Q5T0L3 261 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 LINC01590Q5TEZ4 76 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 BIVMQ86UB2 503 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 CIARTQ8N365 385 aaPredicted RBP12.88□□□□□ -0.35
CPSF1-208ENST00000532560 OR6K6Q8NGW6 343 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 SLC25A40Q8TBP6 338 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 NEU4Q8WWR8 484 aaPredicted RBP12.88□□□□□ -0.35
CPSF1-208ENST00000532560 SLC7A6Q92536 515 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 FAM168AQ92567 244 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 TFAP2CQ92754 450 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 RDH12Q96NR8 316 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 PITX2Q99697 317 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 ATF6BQ99941 703 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 OR2J1Q9GZK6 312 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 MED20Q9H944 212 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 WDR76Q9H967 626 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 TAAR3PQ9P1P4 343 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 ENOPH1Q9UHY7 261 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 OAZ3Q9UMX2 235 aa12.88□□□□□ -0.35
CPSF1-208ENST00000532560 IGHV4-30-2A0A087WSY4 118 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 FAM183AA6NL82 134 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 PRR23D1E9PI22 279 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms