RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 HIST2H2BCQ6DN03 193 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 KCTD18Q6PI47 426 aaPredicted RBP6.47□□□□□ -1.37
CD44-228ENST00000528455 XKRXQ6PP77 449 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 ZNF474Q6S9Z5 364 aaPredicted RBP6.47□□□□□ -1.37
CD44-228ENST00000528455 B3GLCTQ6Y288 498 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 HIST2H3AQ71DI3 136 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 SSX8Q7RTT4 187 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 LIX1LQ8IVB5 337 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 STX19Q8N4C7 294 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 C1orf162Q8NEQ5 155 aaPredicted RBP6.47□□□□□ -1.37
CD44-228ENST00000528455 GJC3Q8NFK1 279 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 TSPAN14Q8NG11 270 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 OR10H5Q8NGA6 315 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 OR4F15Q8NGB8 312 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 OR6K6Q8NGW6 343 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 OR2AJ1Q8NGZ0 328 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 OTOSQ8NHW6 89 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 ASB17Q8WXJ9 295 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 C11orf40Q8WZ69 217 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 NABP1Q96AH0 204 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 ZMYND19Q96E35 227 aaPredicted RBP6.47□□□□□ -1.37
CD44-228ENST00000528455 MRPL48Q96GC5 212 aaKnown RBP6.47□□□□□ -1.37
CD44-228ENST00000528455 CLUHP3Q96NS8 147 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 SIGLEC11Q96RL6 698 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 CNN2Q99439 309 aaKnown RBP6.47□□□□□ -1.37
CD44-228ENST00000528455 OR10A4Q9H209 315 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 C1orf198Q9H425 327 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 POLE4Q9NR33 117 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 EXOSC1Q9Y3B2 195 aaKnown RBP6.47□□□□□ -1.37
CD44-228ENST00000528455 RNF114Q9Y508 228 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 TIMM10BQ9Y5J6 103 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 A0A1W2PPL8 197 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 DAPL1A0PJW8 107 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 TVP23AA6NH52 213 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 TRIM64CA6NLI5 447 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 ZNF670-ZNF695F2Z2N8 137 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 ZNF254O75437 659 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 SULT1C4O75897 302 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 GPANK1O95872 356 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 ITGA5P08648 1049 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 RPSAP08865 295 aaKnown RBP6.46□□□□□ -1.38
CD44-228ENST00000528455 PSMB1P20618 241 aaKnown RBP6.46□□□□□ -1.38
CD44-228ENST00000528455 COX5AP20674 150 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 BMP5P22003 454 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 IGHV1-2P23083 117 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 C21orf33P30042 268 aaPredicted RBP6.46□□□□□ -1.38
CD44-228ENST00000528455 CDAP32320 146 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 DCTDP32321 178 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 ARR3P36575 388 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 TUBA4AP68366 448 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 ADAM8P78325 824 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 ROM1Q03395 351 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 EMX1Q04741 257 aaPredicted RBP6.46□□□□□ -1.38
CD44-228ENST00000528455 IRF3Q14653 427 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 SLC25A35Q3KQZ1 300 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 FBXL19-AS1Q494R0 122 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 SLC36A2Q495M3 483 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 SLC18B1Q6NT16 456 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 ZNF813Q6ZN06 617 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 PLEKHG7Q6ZR37 379 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 AHSA2Q719I0 299 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 DPY19L4Q7Z388 723 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 LHFPL3Q86UP9 236 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 CDC20BQ86Y33 519 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 ERI1Q8IV48 349 aaKnown RBP6.46□□□□□ -1.38
CD44-228ENST00000528455 SKA3Q8IX90 412 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 SLC35F2Q8IXU6 374 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 SPARTQ8N0X7 666 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 C17orf78Q8N4C9 275 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 NANOGP1Q8N7R0 232 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 STEAP2Q8NFT2 490 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 OR51G2Q8NGK0 314 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 OR1K1Q8NGR3 316 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 HAVCR2Q8TDQ0 301 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 THEM6Q8WUY1 208 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 LRRC46Q96FV0 321 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 ZNF649Q9BS31 505 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 ZNF416Q9BWM5 594 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 OPN3Q9H1Y3 402 aaPredicted RBP6.46□□□□□ -1.38
CD44-228ENST00000528455 MOV10Q9HCE1 1003 aaKnown RBP6.46□□□□□ -1.38
CD44-228ENST00000528455 OBP2BQ9NPH6 170 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 PAK1IP1Q9NWT1 392 aaPredicted RBP6.46□□□□□ -1.38
CD44-228ENST00000528455 B3GNT2Q9NY97 397 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 ERVK-18Q9QC07 812 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 SH3BGRL2Q9UJC5 107 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 LAMP5Q9UJQ1 280 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 ERGIC3Q9Y282 383 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 TMA7Q9Y2S6 64 aaKnown RBP6.46□□□□□ -1.38
CD44-228ENST00000528455 CAB39Q9Y376 341 aaPredicted RBP6.46□□□□□ -1.38
CD44-228ENST00000528455 SNX5Q9Y5X3 404 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 COMMD3-BMI1R4GMX3 469 aa6.46□□□□□ -1.38
CD44-228ENST00000528455 PCNX1Q96RV3 2341 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 CACNA1DQ01668 2161 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 ARPC4-TTLL3A0A0A6YYG9 625 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 A0A1W2PQL4 384 aaPredicted RBP6.45□□□□□ -1.38
CD44-228ENST00000528455 TMEM129A0AVI4 362 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 CIB4A0PJX0 185 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 C16orf97H3BN30 126 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 PAX4O43316 350 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 SELENOFO60613 162 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms